Bacillus megaterium WSH-002: BMWSH_1082
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Entry
BMWSH_1082 CDS
T01890
Symbol
pnpA
Name
(GenBank) Polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase)
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
bmh
Bacillus megaterium WSH-002
Pathway
bmh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bmh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BMWSH_1082 (pnpA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bmh03019
]
BMWSH_1082 (pnpA)
03016 Transfer RNA biogenesis [BR:
bmh03016
]
BMWSH_1082 (pnpA)
Enzymes [BR:
bmh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
BMWSH_1082 (pnpA)
Messenger RNA biogenesis [BR:
bmh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
BMWSH_1082 (pnpA)
Transfer RNA biogenesis [BR:
bmh03016
]
Prokaryotic type
tRNA degradation factors
BMWSH_1082 (pnpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
KH-I_KHDC4-BBP
SPATA25
OB_RRP5_4th
S1_2
Motif
Other DBs
NCBI-ProteinID:
AEN87966
UniProt:
A0A8D4BII5
LinkDB
All DBs
Position
1101084..1103210
Genome browser
AA seq
708 aa
AA seq
DB search
MEQEKRVFSVDLAGRKLEVEVGQLAKQANGAALIRYGDTVVLSTATASKEPKNVDFFPLT
VNYEERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSVVMSV
DQNCSSEIAAMFGSSLALSVSDIPFEGPIAGVIVGRVDNEFVVNPTVDELEKSDIHLTVA
GTKDAINMVEAGADEVPEEVMLEAIMFGHEQIKKLIAFQEEIVAAVGKEKVEVELYTVDA
DLERQVREIAEGDMNRAVQVQEKHARENAIKEVKSAVAAKFEEQDVEEEVLNQVNEILSK
LVKSEVRRLITEEKVRPDGRSIDEIRPLSSETNLLPRTHGSGLFTRGQTQALSICTLGAL
GDVQILDGLSVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPNEK
DFPYTIRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLIKSGEHYSILT
DIQGMEDHLGDMDFKVAGTENGVTALQMDIKIDGLSREILDEALQQAKKGRMQILNHMMS
TIATPRQELSQYAPKILTMAINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTIFISS
IDQPMNEKAKKIIEDLVREVEVGQMYLGKVKRIEKFGAFVEIFSGKDGLVHISELAEERI
GKVEDVVAIGDELLVKVMEIDKQGRVNLSRKAILKEQKEKEEKAKETK
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atggaacaagaaaaacgagtgttctccgtagatctagctggacgaaagctagaagttgaa
gttggccagttggcaaaacaagcaaatggcgcagcattaatccgctatggagacacagtt
gtattaagtacagcaacggcttcaaaagagcctaaaaatgtagatttcttcccgttaaca
gtaaactatgaagagcgtttatatgcagtcggtaaaatcccaggtggattcattaagcgt
gaaggcagaccaagtgaaaaggcaatcttggccagccgtttaatcgaccgtccgattcgt
cctttatttgcagatggtttccgaaacgaagttcaagttgtcagcgttgtaatgagcgta
gatcaaaactgttcttcagaaatcgcggcaatgttcggttcttcattagcattatcagta
tctgatattccatttgaaggtcctattgcaggcgtaatcgtaggccgtgtagacaatgaa
tttgtggtaaacccaacggtagatgagcttgaaaaaagcgatattcatctgacggttgct
ggtacaaaagacgcgatcaacatggttgaagcaggcgctgatgaagtaccggaagaagta
atgttagaagcaattatgtttggacacgagcaaattaaaaaattaattgcgttccaagaa
gaaattgtagcagcagtaggcaaagagaaagtagaagttgagctttatactgttgatgcg
gaccttgagcgtcaagttcgcgaaattgcagaaggtgacatgaaccgtgctgttcaagtt
caagaaaagcatgcgcgcgaaaatgccattaaagaagtaaaaagcgcagtagctgcaaaa
tttgaagagcaagatgtagaagaagaagtactaaaccaagtgaatgaaattttatcgaag
cttgtaaaaagtgaagtgcgtcgcttgatcacagaagaaaaagtgcgtcctgatggccgt
agtattgacgaaattcgtccgctttcttctgaaacaaacttgcttcctcgtacacacgga
tctggactatttacgcgtggacaaactcaagcgcttagcatttgtacattaggtgcactt
ggcgatgtccaaattttagatggtttaagtgtagaagaatctaaacgcttcatgcatcac
tataacttcccttcatttagtgttggtgaaaccagaccgatgcgcggaccgggtcgtcgt
gaaattggacatggtgcgctaggtgaacgtgcacttgagccggttattccaaatgaaaaa
gatttcccttatacaattcgtcttgtatctgaagtattagagtcaaacggttctacttca
caagcaagtatttgtgcaagcacgcttgcaatgatggatgctggggttccaattaaagca
cctgtagcagggattgccatgggtctgatcaaatcaggtgaacactactcgattctaacg
gacattcaaggaatggaagatcacctaggagacatggactttaaagtagcaggtacggaa
aatggcgtaactgcgcttcaaatggatattaaaattgacgggttatctcgtgaaatttta
gacgaagcccttcaacaagcaaaaaaaggccgtatgcaaatcttaaatcatatgatgtca
acgattgctacgcctcgtcaagagctttctcaatatgcgcctaagatccttacaatggct
attaaccctgataaaattcgtgatgttattggaccaagcggcaagcaaatcaataaaatc
atcgaagaaacaggcgttaaaattgatatcgaacaagatggtacaatcttcatttcttct
attgatcagccgatgaatgaaaaagcgaagaaaattattgaagatcttgtacgcgaagtt
gaagtcggccaaatgtacttaggaaaagtaaaacgaattgaaaaattcggtgcgtttgta
gaaatcttcagcggaaaagatggacttgttcacatttcagagcttgcagaagagcgtatt
ggaaaagtagaagacgttgtagcgattggtgacgagcttttagttaaagtcatggaaatt
gataaacaaggccgcgttaacttatctcgtaaagcaattttaaaagaacaaaaagaaaaa
gaagaaaaagcaaaagaaacaaaataa
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