Bacillus megaterium WSH-002: BMWSH_1091
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Entry
BMWSH_1091 CDS
T01890
Symbol
ymfA
Name
(GenBank) Hydrolase of the metallo-beta-lactamase superfamily-like protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
bmh
Bacillus megaterium WSH-002
Pathway
bmh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bmh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BMWSH_1091 (ymfA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bmh03019
]
BMWSH_1091 (ymfA)
Messenger RNA biogenesis [BR:
bmh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BMWSH_1091 (ymfA)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
DUF7684
Motif
Other DBs
NCBI-ProteinID:
AEN87975
UniProt:
A0A8D3WZ68
LinkDB
All DBs
Position
1111303..1112970
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AA seq
555 aa
AA seq
DB search
MVLEKTENIKISALGGVGELGKNMYVVEINENIYVLDAGSKFPGGEMLGIDIVIPDITYL
VENQHNVKGIFVTHGHEEQIGAIPFILQKLDVPVYGTELTLALIKEKLKEYGIKKYEALH
PITSSTVLSFEGVDISFFRTQHSIQDSVGICLQTNQGAIVYTGDFKFDQNSVSIQSADIG
KMAAIGEKGVLCLLSDSTNADKPGYTVSEAVIGQNITDAFYKSKGRIIVAAYSSNLHRIQ
QIIHAAYQHGRNLIVMEKSMLKIIDIAAKLGHLQLPEDLIVPVQKLKDLPEQNTVILTTG
HHGEPISGLTRMAKQSHKFIQIKQDDTVLLAATPVAGHETTFSKTIDVIYRLGASVVFAQ
KKVQASGHGSQEELKFMINLTKPKYVMPVNGEYRKQKAYAKLAGQLGISEDHICLLEKGE
RIEFKDARMYPSGSIQAGNTLIDGLGVGDIGNIVLRDRRLLSQDGILTVVVTINKRQKTV
VAGPEIISRGFVYVRESEKLLEEATKIVQQILEKCMEDKVIEWSSLKLKMRESLNQFLYE
KTRRKPMILPIIMEI
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atggtactagaaaagacagaaaatattaaaatttcagccttgggtggagtcggagaactt
ggaaaaaacatgtatgtggtggaaatcaatgaaaacatatatgtgttagatgcagggtca
aagtttccgggaggggaaatgttgggaattgatattgtcattcctgacattacatattta
gtagaaaatcagcacaacgtaaaaggcatatttgttactcatggacacgaagagcaaatt
ggggctattccttttatacttcaaaaattggacgtgccggtatatggtacagaattaacg
ctagcacttatcaaagaaaagttaaaagagtatggaattaaaaaatatgaagctttacat
cctatcacttcgtcaacggttttatcgtttgaaggagtggatatttcattttttagaacg
cagcacagcatacaagattcagtcggcatttgtttacaaacaaaccaaggtgcgattgta
tatacaggtgattttaaatttgatcaaaattcagtcagcattcaaagcgctgatattgga
aaaatggctgccattggggaaaaaggggtcctgtgtttgctttcagacagtacaaatgcg
gataagccaggctatacagtttccgaagccgttatcggacaaaatattaccgacgctttt
tataaaagcaaaggtcgaatcattgttgctgcatacagttccaatctgcaccgcattcag
caaatcattcatgccgcatatcagcacggccgtaacctgatcgttatggaaaaaagtatg
ctgaaaatcattgatattgcagcaaaacttggacatttgcagctgccagaggatttaatt
gttcctgtgcagaagctaaaagatctgccagaacaaaacacggttattttaacaacaggc
catcacggagaaccaatttcaggtcttactcgaatggctaaacagtcccataaatttatt
caaatcaaacaggacgatacggtcctgctggctgctacacctgtggcggggcacgaaacg
accttttcaaaaacaattgacgttatctatcgtttgggagcaagcgtagtgtttgcacag
aaaaaagtgcaggcttccggacacggaagtcaagaagaattaaaatttatgattaactta
acaaagccgaaatatgttatgcctgtgaatggagagtatcgaaaacaaaaagcttatgca
aagctggccggtcaattaggaatatcagaagatcatatttgtttgcttgaaaaaggtgag
cgaattgaatttaaagatgctcgcatgtaccctagcggttctattcaagcgggaaatacg
ctcattgatgggctaggtgtcggtgatattggaaatatcgttctgagagatcgcaggctg
ctgtcacaggacggaatcttaacggtagtagttacgattaataaacgccaaaaaacggta
gtagcggggccagaaatcatctctcgcggattcgtctatgtaagagaatcagaaaagctt
ttagaagaagcaacgaagattgttcagcaaattttagaaaagtgtatggaagacaaagtg
atcgagtggtcttcattaaaattaaaaatgagagaaagtttaaatcaatttttatatgaa
aaaacccgtcgtaaaccgatgattttaccgattatcatggaaatctaa
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