Bacillus megaterium WSH-002: BMWSH_5156
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Entry
BMWSH_5156 CDS
T01890
Symbol
mfd
Name
(GenBank) Transcription-repair coupling factor (Helicase, mfd)
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bmh
Bacillus megaterium WSH-002
Pathway
bmh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bmh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BMWSH_5156 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bmh03400
]
BMWSH_5156 (mfd)
Enzymes [BR:
bmh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BMWSH_5156 (mfd)
DNA repair and recombination proteins [BR:
bmh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BMWSH_5156 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
RecG_dom3_C
MFD_D3
UB2H
Motif
Other DBs
NCBI-ProteinID:
AEN92034
UniProt:
A0A8E4BHS1
LinkDB
All DBs
Position
complement(4944566..4948096)
Genome browser
AA seq
1176 aa
AA seq
DB search
MRGIRQQFEENKEIGAVVSSLEEGLKEQLVTGISGSARSVLMALLNEDKKYPLLVVTHNL
YQAQKVYEDLLHLLPEKDVFLYPVNDLVATEVGIASPELKAQRIEVLNYWSQHTGGVVVT
PLAGIRKLLPPKARWEQTQLPFQMGIDIDVDHYLKRLVELGYERASMVSAPGEFSVRGGI
IDIYPLTEELPVRIELFDTEIDSIRTFTIEDQRSQEQLKEISIGPATEIIVKQNEVAKGI
EELEAQLASTLQQVKNAALKATLTENIKGEIEQLRQGQLLENMFKYLSFFYESPASLLDY
LPEGGLVIFDETTRIQETSDQLETEEAEWITELLGQGQIVRDVQLSHKLPSLIQRAKHQF
LYLSLFLKHVSYTSPQNIINISCKQMQQFYGQMNLLKSEIERWKNANYTVVLLGADKERV
KKLESVLADYDIDSSILDGNGQLVPGLVQIIEGDLQMGFELPMQKLAVLTEEELFKKRVK
KSKRRQKLSNAERIKSYSELNVGDYVVHVNHGIGRYLGMETLEINGNHKDYIHIKYEGSD
KLYVPVEQIDQVQKYVGSEGKEPKVYKLGGNDWKKVKRKVESSVQDIADDLIKLYAEREA
SKGYAFSPDGDLQREFETAFPYQETEDQLRSVQEIKKDMEHERPMDRLLCGDVGYGKTEV
AIRAAFKAVTDGKQVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRSRKQQQETIK
GLKNGTVDVVIGTHRLLSKDVIYKDLGLLVIDEEQRFGVTHKEKIKQMKANVDVLTLTAT
PIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPVLVREAIERELARDGQVYFLYN
RVEDIERKAEEISMLVPDARVTYAHGKMNETELEAVILSFLEGEYDVIVSTTIIETGVDI
PNVNTLIVNNADKMGLSQLYQLRGRVGRSNRVAYAYFTYHKDKVLTEVAEKRLQAIKEFT
ELGSGFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERRGSDGESVKFN
VEMNLDLDAYIPDQYITDGRLKIEMYKRFRGIEALEDIQELQDEMIDRFGEYPAEVEYLF
KVAETKVYATQNLVESILQSKQEISILLSEEASSTIDGQKLFMLGDQFGRMVSLGMEGKK
VKLVVNVKGLAQKEWLNIVYQLVKGVATVKKEQVTN
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
ttgcgagggattagacagcaatttgaagaaaataaagaaattggagctgttgtcagcagt
ttagaagaaggtttgaaagaacagttagtaacgggaatttccggttcagctcgatctgta
ttaatggcactcttaaatgaggataaaaaataccccttattagtagtgactcataattta
tatcaagctcaaaaagtgtatgaagaccttttgcatcttttaccggaaaaagacgttttc
ttataccctgttaacgatttagttgctacagaagtggggattgcaagtccagaattaaag
gctcagcgaattgaagtactcaattattggagtcaacatacaggtggagtagttgtaaca
ccacttgcaggaattcgaaagctgctgcctcctaaagcaagatgggagcaaacgcagctg
ccgtttcaaatgggaattgacatcgacgttgatcattatttaaaaaggttagttgagttg
ggttatgagcgggcatcgatggtttcagctccgggtgagtttagtgtgcgcggaggaatc
attgacatttatccgttaacagaagagctacctgtccgaattgaactatttgatacagag
attgattcgattcgtacttttacaatcgaggatcaacgctctcaagagcagttaaaagaa
atttcaatcggccctgctacggaaatcattgtgaaacaaaatgaagtggctaaaggaatc
gaagagctagaagcacagctggcttcgacgcttcaacaagtaaaaaacgcagcgctaaaa
gctaccttaacagaaaatattaaaggtgaaattgaacagctgcgtcaaggtcagcttctt
gaaaatatgttcaagtatttatcattcttctacgaatcgcctgctagtttactagattat
ttaccagaaggcggccttgtcatctttgatgagacaactcgaattcaagaaacgtctgat
cagcttgaaacagaggaagctgaatggataacagaattattaggacagggacaaattgtt
cgggacgttcaattatctcacaagctcccatctcttattcagcgagcaaaacatcagttt
ttatacttatcgttatttttgaagcacgtatcgtatacgagtccgcaaaatattattaat
atttcatgtaagcagatgcagcagttttacggccaaatgaacttattaaaaagtgaaatt
gaacgttggaaaaatgctaattatacggtagtcctcttaggagcagataaagagcgcgta
aaaaaacttgaaagtgtgctagcagattatgatattgactcatctattttagatggaaat
ggtcagcttgtgccaggtcttgttcaaattattgaaggcgatttacaaatgggctttgaa
ctgccaatgcaaaaattagccgttttaactgaggaagaattgtttaaaaaacgggtaaag
aaatcaaagcgtcgtcaaaagctttccaatgcagagcgtattaaaagttattcagagtta
aacgtaggtgactatgtcgttcacgtgaaccacggtattggccgttatttaggaatggaa
acgttagagattaacggtaatcataaagattatatccatatcaaatatgaaggctctgac
aagctgtatgttcctgttgaacagattgatcaagtacaaaaatatgtaggctctgaaggg
aaagagccaaaagtatataaacttggcggaaatgactggaagaaagtgaaacgaaaagtt
gagtcttctgttcaagacatcgctgatgacttaattaaactgtatgcagagcgtgaagca
agtaaaggttatgcattttccccggatggcgatttacagagggaatttgaaacagctttc
ccttatcaagaaaccgaagatcagcttcgttctgtacaagaaattaaaaaggatatggaa
catgaaaggccaatggatcgtctgctttgtggagacgttggatacggaaaaacggaagta
gccattcgtgctgcgtttaaagctgtgacagatggaaaacaagtggctattttagtgcca
accactattttagctcagcagcattatgaaaccatccgtgagcgttttcaagactatcca
atcaatatagggctattgagtcgctttcgcagccgtaaacagcagcaagaaacaattaaa
gggctaaaaaatgggaccgtagatgtagtgattggtacacatcgtttactatctaaagac
gtaatttataaagatttagggttgttagttatcgatgaagagcagcgttttggtgtaacg
cacaaggaaaaaattaagcaaatgaaagcaaacgttgatgtccttacacttacagcaaca
cctattccacgaacattacatatgtccatgttgggcgtaagggatttgtctgttattgaa
acgccgcctgaaaatcgttttccggttcaaacatatgtagtagagtataacccggttctg
gttcgtgaagcgattgagcgtgagttagcgcgtgatggccaagtttactttttatataat
cgcgtagaagatattgaacgaaaagcagaagaaatttcgatgctcgtgcctgatgccagg
gtaacgtatgcccacggaaaaatgaatgaaacagaactcgaagcggttatcttaagcttt
ttagaaggcgaatatgacgtgattgtgagtacaaccattatcgaaacaggagtagatatt
ccaaatgtaaatacgctcattgtcaataatgctgataagatgggattatcacaactgtat
caattaagagggcgcgtaggtcgttcaaatcgcgtggcatatgcgtactttacgtatcat
aaagacaaagtactgacagaagtagctgaaaagcgtctgcaagctattaaagaattcact
gaattaggttctggttttaaaattgctatgcgtgatctttcaatacgtggcgccggaaac
ttactgggtgctcagcagcatggatttatcgattctgtcggtttcgatctctattcacaa
atgcttaaagaagcgatagaggaaagacgcgggtctgacggagaaagtgtgaaatttaat
gtggaaatgaatctggacttagacgcgtatatccctgatcagtacattacagacggccgc
ttgaaaattgagatgtataagcgctttagaggaattgaagcactagaggatattcaagag
ttgcaggatgaaatgattgatcgttttggagagtatccggctgaggttgagtatttgttt
aaagtagctgaaacaaaagtatatgcaacgcagaacttagtagaatctattcttcagtca
aaacaagaaatttctattctgctgtctgaagaagcgagctcaacgatagacggtcaaaaa
ttattcatgctaggtgatcaatttggcagaatggtcagcttaggtatggaaggcaagaaa
gtaaaattagtggttaatgtaaaaggacttgctcaaaaagaatggctcaatattgtgtat
cagttagtaaaaggagtagccactgttaaaaaagaacaagttacaaattaa
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