Babesia microti: BMR1_01G03045
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Entry
BMR1_01G03045 CDS
T05554
Name
(RefSeq) MTR4, SKIV2L2, ATP-dependent RNA helicase DOB1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
bmic
Babesia microti
Pathway
bmic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bmic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BMR1_01G03045
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bmic03019
]
BMR1_01G03045
03041 Spliceosome [BR:
bmic03041
]
BMR1_01G03045
03009 Ribosome biogenesis [BR:
bmic03009
]
BMR1_01G03045
03016 Transfer RNA biogenesis [BR:
bmic03016
]
BMR1_01G03045
Enzymes [BR:
bmic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
BMR1_01G03045
Messenger RNA biogenesis [BR:
bmic03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
BMR1_01G03045
Spliceosome [BR:
bmic03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
BMR1_01G03045
Complex C
U4/U6.U5 tri-SnRNP related factors
BMR1_01G03045
Ribosome biogenesis [BR:
bmic03009
]
Eukaryotic type
Pre-60S particles
Helicases
BMR1_01G03045
Transfer RNA biogenesis [BR:
bmic03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
BMR1_01G03045
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
Motif
Other DBs
NCBI-GeneID:
24423684
NCBI-ProteinID:
XP_012647674
UniProt:
I7IPM0
LinkDB
All DBs
Position
I:complement(<1115197..>1118442)
Genome browser
AA seq
988 aa
AA seq
DB search
MACSKRPSDDDNEGVSKYLRKDSLFSLRVPVVIEKLSVRPGSNCSHHVVRLPETTLPIFD
PEYIPQAKQYKFKLDEFQLRSIQCLENNQSVLVAAHTSAGKTVVAEYAIAMGILYKHRVI
YTSPIKALSNQKYRDLSDEFKDVGLMTGDITLNPTASVMVMTTEILRSMLYRGNELIQEM
KYVIFDEIHYMRDRERGVVWEETIIMLPDTVTFVFLSATLSNTTEFAEWICRIKHQPCHV
IYTDFRPTPLQHYIFPANGDGIFMILDEHKNFKQQAFYQALATLRPSSSGIDRKQMRSRA
NPDIAKIVTMCENRKYTPIIIFCFSKNECEANATFLKQLDITSESEKSMIEEIFQNAMAT
LADDDRKLPQAVSILPMLKRGIGIHHGGLLPIIKEVIEILFQESLIRVLFSTETFSMGIN
MPAKTVVFTGLKKWDGQTHRIITSGEYIQMAGRAGRRGLDDRGLVIVMIDESMKIEEMKK
LFLGDACRLDSKFYLGYNMLLNLIRNDGTTPEYMIERSFHQFQMDKATIQMKEQLELSSK
KTQEMKNVLKMANIPEEEHPNFDVNAEVANYYLMRHEIASLREEYRMIISESDQILDFIN
LGRLVKLVDQTTGANWGWGICFGSARIKIKDKRKVYIVDCLVSCTQTSINGDCPVPSTIA
TESTFQIIPFTLDCIVEWSQIRMKIDSNFRVSSSTCQIDLRHKFDHILKRFRGNDELHEM
PLLDPIKHIGIEDRRLCEIIAAIGDLEKKISASPLIGFKYLDIVYKNYLEYIKLKDRENE
LKKEFVLHNRLVLSQELKAMKGVLVDLSYISSEGIVTYKGRFACEINASDEIIVTELLFS
NFFEGMEPDYICAYLSCLVHDEKNEVHSVNDQKLADGFAKIQEIVSNVGNVMVKNKIEIT
VENYVAKYRPSLMMIVLRWARGESFTDILANSSEYEGSVIRSFRRLDELLRQLACACRSI
DNSTMEQNFLNAMTKMKRGIAFSSSLYL
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
atggcttgctcaaaacgtccttccgacgatgataatgagggtgtcagtaaatatctgagg
aaggatagtttatttagtctccgtgttcctgttgttatcgaaaaattgagtgtaagacct
gggtccaattgcagtcaccatgttgtacgattgccagaaacgacattgccaattttcgat
cctgaatatataccccaagccaaacaatataaatttaagctggatgagtttcagcttaga
tctattcagtgtttggagaataatcaatcagtactggtggccgctcataccagtgccggc
aagacggtggtagcagagtacgccattgccatgggcatcctatacaagcatagagtaata
tacactagtccaattaaggcgctatctaaccaaaagtatagggacctttccgatgaattt
aaggatgtcggtttgatgactggtgatatcactcttaacccaacggcgtcagtaatggtt
atgacaacagaaatcttgcgtagtatgttgtacaggggcaacgagcttattcaggaaatg
aaatatgtcatttttgacgagatccactatatgcgagatagggaaaggggggttgtatgg
gaggaaacaataattatgctcccagacactgttacatttgtatttttatcagctacacta
tctaacacaactgaatttgctgaatggatttgcagaatcaagcaccaaccttgccatgtt
atttacaccgatttccggcctacgccgttacagcattatatctttcctgctaacggtgat
ggtatttttatgattttggacgaacacaagaatttcaaacagcaagcattttatcaagcc
ttggcaactttgagaccaagtagtagtggaattgatcgcaaacaaatgagatccagggca
aatcccgatatcgcaaaaatcgtcacaatgtgtgaaaatcgcaagtatacacccataata
atattttgtttcagcaaaaatgaatgcgaagccaatgccacgtttctaaaacaactagac
ataacttcagagagtgagaagagtatgattgaggagatatttcaaaatgcaatggcaact
ttagctgatgatgataggaagttgccacaggcagtatcaattttaccaatgcttaaacgt
ggcatcggcattcatcacggggggttactaccaattattaaggaagtgattgaaatccta
ttccaagagtcgcttatacgagtgctgtttagcacggaaacattttcaatgggaataaat
atgcctgccaaaacagtggtatttacaggtctaaagaaatgggatggtcagacccatcgc
ataataacttcaggtgaatatattcaaatggctggaagagcaggcagaagaggactagat
gataggggtctcgtcatagtaatgatcgatgaatctatgaaaatagaagaaatgaagaag
ctatttctaggggatgcatgtcgtttagatagtaaattctacttgggctataacatgtta
ctgaacctaattagaaacgatgggaccactcctgagtatatgatagagagatcttttcat
caattccaaatggataaagccactatacaaatgaaagaacaactagaattatcatctaag
aaaacacaggagatgaaaaatgtgttaaaaatggcaaatataccagaagaagagcaccct
aatttcgacgtaaatgcagaggttgccaattactacctaatgcgtcatgaaatagcatca
ctaagggaggaatatagaatgataatcagcgaatcagaccaaatattagactttatcaac
ctaggcagattagtcaaacttgtggaccaaactacaggtgcaaattgggggtgggggatt
tgctttggttcagcccgtatcaagatcaaggacaagagaaaggtttacattgtagactgt
cttgtatcttgtacacagactagcattaatggtgattgtcctgtaccttcaactattgca
acggagtctacatttcagataatcccattcacattggactgcattgtagaatggagccaa
ataagaatgaagattgacagcaacttcagggtctcatcatctacttgtcagattgatttg
aggcacaaatttgaccatatactcaaacggtttaggggcaatgatgaattacacgaaatg
ccactgctggacccaattaaacatataggaattgaggatagaaggctatgtgaaattatt
gcagcgattggggatttggagaagaaaatatctgcatcgcctctaattggattcaagtac
ctagatatcgtatacaagaattacctggaatatatcaagctcaaagatagggaaaatgaa
cttaaaaaggagttcgttttgcacaataggttagtgctgtcacaagaacttaaagctatg
aagggggtacttgtagatttgagctacatcagtagtgagggaattgttacgtataaggga
agatttgcctgtgaaataaacgcttcagatgaaattatagtgacagagctattatttagc
aatttttttgaggggatggagcctgattatatctgtgcttatttgagctgtttggtgcat
gatgaaaagaatgaagtacatagtgtcaatgatcagaaattagcggatgggtttgccaag
atacaggaaatagtaagcaatgtggggaatgtaatggtcaaaaataaaattgaaattaca
gtggaaaactacgtggcaaagtacagaccgtcgctcatgatgatagtccttaggtgggcg
aggggagaatcgttcactgatatattggctaattcttcggaatacgaagggtccgtcatt
cgttcttttagaagattggatgagttgctgaggcaattagcctgcgcttgtaggagcatt
gacaactcgactatggagcaaaattttttaaacgcaatgaccaagatgaagaggggcata
gcgttttcatcatctctctacttatga
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