Babesia microti: BmR1_04g06065
Help
Entry
BmR1_04g06065 CDS
T05554
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
bmic
Babesia microti
Brite
KEGG Orthology (KO) [BR:
bmic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bmic03016
]
BmR1_04g06065
Enzymes [BR:
bmic01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
BmR1_04g06065
Transfer RNA biogenesis [BR:
bmic03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
BmR1_04g06065
Prokaryotic type
tRNA splicing ligases
BmR1_04g06065
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF7683
Motif
Other DBs
NCBI-GeneID:
24425858
NCBI-ProteinID:
XP_021337701
UniProt:
A0A1N6LXL1
LinkDB
All DBs
Position
IV:459779..461892
Genome browser
AA seq
503 aa
AA seq
DB search
MESYVTPVDGITHLYKVSKGIVPNMNVDGFFFANESLKVLLLDELKLYNARKTGFLPSIM
QLANVAALPGIVKGSIALPDAHSGYGFSIGNVAAFDMSRPESVVSPGGVGFDINCGVRLL
RTNLNLKDLEDKKDMLATALFNKIPVGVGSKGTIKCSDGDLFDILTRGMEWAEESGFAWS
EDRERCEERGKMSQADATLVSDRAKKRGIPQLGTLGAGNHYVEVQVVEEIYDSRAARAMG
LEVEGQVCMMIHSGSRGLGHQVASDALNNMEKNIPTNDPQLACSHINSESGQRYLKCMAA
AANYAWVNRSVMTHLSRVALSEVFDMDADDLDMHIIYDVSHNVAKIEEHMVDGKPKNLLV
HRKGATRAYPPRHKQIPLEYIDIGQPVLIGGTMGTCSYVLTGTEKAMELTFGTTCHGAGR
ASSRSSARKTLSTNKVIDDLKSKGIAIRVASPSLVMEEAPEAYKDVTSVVDVSICIQLFS
DTCHEAGISKKCIKLKPIAVIKG
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atggaatcatatgtaacaccagtggatggaatcacccacctctataaagtttcgaaaggg
atagtcccgaatatgaacgtagatgggttcttctttgcgaatgaatcactaaaagtgctt
ttgttggatgaattaaagctttataatgccaggaaaacgggattcttaccctccataatg
caattggcaaatgttgcggctttgcccggtattgtcaaaggtagtatcgctttgcctgat
gcacactctggttacggattttccataggaaatgttgcggcatttgacatgagtaggcct
gaatcagtggtttctcctggaggtgtgggatttgatatcaattgtggcgtaagactattg
agaactaatttgaatctgaaggatttggaggataaaaaagatatgttagccaccgcatta
tttaataaaatacccgttggtgtaggttcaaaaggaacaataaagtgcagtgatggcgac
ttatttgatatactaactaggggtatggaatgggccgaagaaagcggattcgcttggagt
gaagatagggaaagatgtgaggaaaggggtaaaatgtctcaggcagatgcaaccctagtg
tcggatagggccaagaagagaggaatccctcagctggggactctaggggcagggaatcat
tatgtagaagttcaggttgtagaggaaatatacgacagtagagctgcccgtgctatggga
ttggaggttgagggacaagtatgtatgatgatacactcgggcagtcgcggtttgggccat
caagtagcaagtgatgcccttaacaatatggaaaagaatatacccactaatgatccccaa
ttggcttgttcacatatcaatagtgaaagtggacagaggtatttgaaatgtatggcagct
gcggcaaattacgcctgggttaaccgcagtgttatgacacatctttcgcgtgttgcattg
agtgaagtatttgacatggacgctgatgatcttgacatgcatattatatatgacgtttct
cataatgtggccaaaattgaggagcacatggtagatgggaagcctaaaaatttactcgtg
catagaaaaggtgcaactagagcatatccccccaggcataagcaaataccactggaatat
attgatataggtcagccagtgctgatcggcggtacaatgggcacttgttcatacgtctta
acaggtaccgaaaaggcaatggaactcacatttggtacaacatgtcatggtgctggtagg
gcgtccagtagaagcagcgctagaaagaccctcagtacgaataaagtgatagatgatctt
aagagcaagggaattgctattagagtggcatcaccaagtcttgttatggaagaggcccct
gaggcctataaagatgtaacgtctgtcgtagatgtaagtatttgtattcagttgttttct
gatacatgtcacgaagcgggaatatcaaagaaatgcatcaagctcaagccaatcgcagtc
atcaaaggttga
DBGET
integrated database retrieval system
