Babesia microti: BmR1_04g09830
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Entry
BmR1_04g09830 CDS
T05554
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
bmic
Babesia microti
Pathway
bmic03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bmic00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
BmR1_04g09830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bmic03019
]
BmR1_04g09830
03041 Spliceosome [BR:
bmic03041
]
BmR1_04g09830
Messenger RNA biogenesis [BR:
bmic03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
BmR1_04g09830
Spliceosome [BR:
bmic03041
]
Complex B
Other components
Prp19-related factors
BmR1_04g09830
Complex C
BmR1_04g09830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_12
TPR_2
Motif
Other DBs
NCBI-GeneID:
24426588
NCBI-ProteinID:
XP_012650541
UniProt:
I7JA07
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All DBs
Position
IV:complement(1766480..1768819)
Genome browser
AA seq
779 aa
AA seq
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MASPRELFNMFRVHYDDEVTRNPHRCSLWLDYVGKLKSICPHRQHLSYLGYSKLYKIEII
TQDNPQSSHITTEEGDLTYEEVFTQILNSYKRALSKMPLSYKLWYCFLRDLVLDIPGSYY
EFPHLYSRANQAFESCLVQLYGTMAIYLLYASFLRLQNRITRVRRVYDLALINLPVTQHD
IVWSEYADFVMEARLFPLGQAVFPRLIQLFPDRKESYYDFLRSIPQQEEEACRCLCGILN
DDTFVSPKGKSQHQYWNELCELIRDHGAYFKNFPAEQVIRQGISKYTDQVSVLWVTLAGI
YARGGNLDMARHIYQEAITSVATVEDFSIVFNCYAKFLEQLANAGKDFDLCIARLEYLVD
NRALLLSSVRLKQNPHIVDHWIKRAAIFGQTDPVRAASVYAEAVQTVDYKIAKGHLSDLW
IRFAGLYESQLDFAGIDKVFELAIVAKYRSVADLATVWCAWIETYLRHGDSERALQLSRR
STSTQSEEGVQRHLCFSLKLWSLALDMEENFGTISTCIACYDRMVELKVVSPLLVSKFCR
FLQKQQHFESSFKAYEKGIGLFQWPHLYHLYLEYISSFCGRYPGTKLERAREIFQQAIGI
RDIFDKAGGQSERQGMAPPEFARPLIYLYAAMEEEYGLARRAIALYRLAAKVSPPGERFV
MYKLYICKTAELFGVMHTREIYSSAIQDGSLDDELVRQLSLQFIKLERGLGEIDRARAIF
VYAAQLFEPSKFPLFWDQWKEFEILHGNQECFRDMLRLKASVSAQSNFSSFTAPLAPPT
NT seq
2340 nt
NT seq
+upstream
nt +downstream
nt
atggctagtcccagagaactgtttaatatgtttcgggtacattacgacgacgaagtcacc
cgcaatccgcatcgttgcagtttgtggctcgactatgtcggaaagctcaagtcaatttgc
ccgcatagacagcatcttagctaccttggttattctaagctatataaaatcgaaataatt
acacaagataatccacaatcatcacacattaccactgaggaaggggacctaacctacgaa
gaagtcttcactcaaatactcaactcttacaagcgtgccctctctaaaatgccactcagc
tataaattatggtattgtttccttagggacttggtgctagatattccaggcagctactac
gagttcccccatctatactcgagggccaatcaagccttcgagtcctgcctggtccagctc
tacgggacaatggccatctacctcctctatgcctccttccttaggttacaaaatagaata
actagggtccgccgggtctacgacttggcgctgattaacttgcccgtcactcagcatgac
atcgtttggtcagaatacgcggactttgtcatggaggcgagacttttcccgctaggacag
gccgtatttcctcggttaattcagctctttcctgaccgcaaggagtcatactatgacttc
ctgcggtctataccgcagcaagaagaagaggcctgtcgttgcctatgtggcatcctcaat
gatgacacattcgtgtccccgaagggaaaatcgcagcaccaatattggaacgaactttgt
gaactgatcagagatcatggagcttacttcaagaacttccctgccgagcaggtcattcgt
cagggtatttcaaagtacaccgaccaggtatctgttctttgggttaccctagccggcata
tacgctaggggtgggaacctggatatggccaggcatatctaccaagaggctatcacaagc
gttgctacagtggaagacttttccatagtatttaattgctatgccaagttcctcgagcag
ctggccaatgcggggaaggattttgatttatgtatagcccgtctcgagtacttggtggac
aatcgcgcattgttactatcatctgttaggcttaagcagaatccgcacattgtagaccat
tggatcaagcgtgccgccatatttgggcagacagacccagtgagggctgcgtctgtctac
gccgaggcggtgcagaccgttgattataagatagcaaagggtcacctctctgacttgtgg
attcgcttcgctggtctatacgagtcccagttggattttgctggtattgataaggttttt
gagttggcgatagtggccaagtatagatctgtagccgatttggccacggtttggtgtgct
tggatagagacttatttgcgtcatggcgactctgagagggccttacagctcagtcgtagg
tcgactagtactcaatctgaggagggggtacagaggcacctttgcttttcgctcaagctt
tggtctctcgcgctggatatggaggagaattttggcacgatatccacctgtatcgcatgt
tacgaccgcatggtagagctgaaggtagtctctcctttgttggtttctaagttttgtcgt
tttttgcaaaagcagcagcactttgagtctagttttaaggcatatgagaagggaattggg
ttgtttcaatggcctcacctataccatttgtatctggagtacatttctagtttttgcggg
cgttacccaggcaccaagctggagcgggcccgagagatctttcagcaggccataggaata
cgcgacatttttgacaaggctggaggacagtctgaacggcaggggatggcacctcccgag
tttgcacgtcccctgatttacctttacgcggccatggaggaggagtacggcctcgcaagg
cgggccatagctctgtaccgcctagccgccaaagtttccccccccggtgagaggttcgtc
atgtacaagctctacatatgcaagacagcggagctttttggggtaatgcacacccgagag
atatattccagtgctattcaggatgggtcattggatgacgagttagtgaggcaactgtcc
ctgcagtttatcaagttggagcggggtttgggcgagatagacagggccagagccatattt
gtttacgccgcccagttattcgagccctcaaagtttccgctattttgggatcagtggaag
gaatttgaaattttgcacggcaatcaggagtgtttccgcgacatgcttcgcctcaaggcc
agcgtatcggcccaatccaacttttctagctttacggcccccttggctccgcctacttaa
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