KEGG   Babesia microti: BmR1_04g09830
Entry
BmR1_04g09830     CDS       T05554                                 
Name
(RefSeq) pre-mRNA-splicing factor SYF1
  KO
K12867  pre-mRNA-splicing factor SYF1
Organism
bmic  Babesia microti
Pathway
bmic03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:bmic00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    BmR1_04g09830
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bmic03019]
    BmR1_04g09830
   03041 Spliceosome [BR:bmic03041]
    BmR1_04g09830
Messenger RNA biogenesis [BR:bmic03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     BmR1_04g09830
Spliceosome [BR:bmic03041]
 Complex B
  Other components
   Prp19-related factors
    BmR1_04g09830
 Complex C
    BmR1_04g09830
SSDB
Motif
Pfam: HAT_Syf1_CNRKL1_C HAT_Syf1_M HAT_Syf1_CNRKL1_N HAT_PRP39_N HAT_PRP39_C Suf TPR_12 TPR_2
Other DBs
NCBI-GeneID: 24426588
NCBI-ProteinID: XP_012650541
UniProt: I7JA07
LinkDB
Position
IV:complement(1766480..1768819)
AA seq 779 aa
MASPRELFNMFRVHYDDEVTRNPHRCSLWLDYVGKLKSICPHRQHLSYLGYSKLYKIEII
TQDNPQSSHITTEEGDLTYEEVFTQILNSYKRALSKMPLSYKLWYCFLRDLVLDIPGSYY
EFPHLYSRANQAFESCLVQLYGTMAIYLLYASFLRLQNRITRVRRVYDLALINLPVTQHD
IVWSEYADFVMEARLFPLGQAVFPRLIQLFPDRKESYYDFLRSIPQQEEEACRCLCGILN
DDTFVSPKGKSQHQYWNELCELIRDHGAYFKNFPAEQVIRQGISKYTDQVSVLWVTLAGI
YARGGNLDMARHIYQEAITSVATVEDFSIVFNCYAKFLEQLANAGKDFDLCIARLEYLVD
NRALLLSSVRLKQNPHIVDHWIKRAAIFGQTDPVRAASVYAEAVQTVDYKIAKGHLSDLW
IRFAGLYESQLDFAGIDKVFELAIVAKYRSVADLATVWCAWIETYLRHGDSERALQLSRR
STSTQSEEGVQRHLCFSLKLWSLALDMEENFGTISTCIACYDRMVELKVVSPLLVSKFCR
FLQKQQHFESSFKAYEKGIGLFQWPHLYHLYLEYISSFCGRYPGTKLERAREIFQQAIGI
RDIFDKAGGQSERQGMAPPEFARPLIYLYAAMEEEYGLARRAIALYRLAAKVSPPGERFV
MYKLYICKTAELFGVMHTREIYSSAIQDGSLDDELVRQLSLQFIKLERGLGEIDRARAIF
VYAAQLFEPSKFPLFWDQWKEFEILHGNQECFRDMLRLKASVSAQSNFSSFTAPLAPPT
NT seq 2340 nt   +upstreamnt  +downstreamnt
atggctagtcccagagaactgtttaatatgtttcgggtacattacgacgacgaagtcacc
cgcaatccgcatcgttgcagtttgtggctcgactatgtcggaaagctcaagtcaatttgc
ccgcatagacagcatcttagctaccttggttattctaagctatataaaatcgaaataatt
acacaagataatccacaatcatcacacattaccactgaggaaggggacctaacctacgaa
gaagtcttcactcaaatactcaactcttacaagcgtgccctctctaaaatgccactcagc
tataaattatggtattgtttccttagggacttggtgctagatattccaggcagctactac
gagttcccccatctatactcgagggccaatcaagccttcgagtcctgcctggtccagctc
tacgggacaatggccatctacctcctctatgcctccttccttaggttacaaaatagaata
actagggtccgccgggtctacgacttggcgctgattaacttgcccgtcactcagcatgac
atcgtttggtcagaatacgcggactttgtcatggaggcgagacttttcccgctaggacag
gccgtatttcctcggttaattcagctctttcctgaccgcaaggagtcatactatgacttc
ctgcggtctataccgcagcaagaagaagaggcctgtcgttgcctatgtggcatcctcaat
gatgacacattcgtgtccccgaagggaaaatcgcagcaccaatattggaacgaactttgt
gaactgatcagagatcatggagcttacttcaagaacttccctgccgagcaggtcattcgt
cagggtatttcaaagtacaccgaccaggtatctgttctttgggttaccctagccggcata
tacgctaggggtgggaacctggatatggccaggcatatctaccaagaggctatcacaagc
gttgctacagtggaagacttttccatagtatttaattgctatgccaagttcctcgagcag
ctggccaatgcggggaaggattttgatttatgtatagcccgtctcgagtacttggtggac
aatcgcgcattgttactatcatctgttaggcttaagcagaatccgcacattgtagaccat
tggatcaagcgtgccgccatatttgggcagacagacccagtgagggctgcgtctgtctac
gccgaggcggtgcagaccgttgattataagatagcaaagggtcacctctctgacttgtgg
attcgcttcgctggtctatacgagtcccagttggattttgctggtattgataaggttttt
gagttggcgatagtggccaagtatagatctgtagccgatttggccacggtttggtgtgct
tggatagagacttatttgcgtcatggcgactctgagagggccttacagctcagtcgtagg
tcgactagtactcaatctgaggagggggtacagaggcacctttgcttttcgctcaagctt
tggtctctcgcgctggatatggaggagaattttggcacgatatccacctgtatcgcatgt
tacgaccgcatggtagagctgaaggtagtctctcctttgttggtttctaagttttgtcgt
tttttgcaaaagcagcagcactttgagtctagttttaaggcatatgagaagggaattggg
ttgtttcaatggcctcacctataccatttgtatctggagtacatttctagtttttgcggg
cgttacccaggcaccaagctggagcgggcccgagagatctttcagcaggccataggaata
cgcgacatttttgacaaggctggaggacagtctgaacggcaggggatggcacctcccgag
tttgcacgtcccctgatttacctttacgcggccatggaggaggagtacggcctcgcaagg
cgggccatagctctgtaccgcctagccgccaaagtttccccccccggtgagaggttcgtc
atgtacaagctctacatatgcaagacagcggagctttttggggtaatgcacacccgagag
atatattccagtgctattcaggatgggtcattggatgacgagttagtgaggcaactgtcc
ctgcagtttatcaagttggagcggggtttgggcgagatagacagggccagagccatattt
gtttacgccgcccagttattcgagccctcaaagtttccgctattttgggatcagtggaag
gaatttgaaattttgcacggcaatcaggagtgtttccgcgacatgcttcgcctcaaggcc
agcgtatcggcccaatccaacttttctagctttacggcccccttggctccgcctacttaa

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