Burkholderia multivorans ATCC 17616 (Tohoku): BMULJ_01557
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Entry
BMULJ_01557 CDS
T00740
Symbol
rnb
Name
(GenBank) exoribonuclease II
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
bmj
Burkholderia multivorans ATCC 17616 (Tohoku)
Pathway
bmj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bmj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BMULJ_01557 (rnb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bmj03019
]
BMULJ_01557 (rnb)
03016 Transfer RNA biogenesis [BR:
bmj03016
]
BMULJ_01557 (rnb)
Enzymes [BR:
bmj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
BMULJ_01557 (rnb)
Messenger RNA biogenesis [BR:
bmj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BMULJ_01557 (rnb)
Transfer RNA biogenesis [BR:
bmj03016
]
Prokaryotic type
tRNA degradation factors
BMULJ_01557 (rnb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
OB_RNR_1st
RNase_II_C_S1
WHD_RNase_R
CSD
Phage_TAC_18
Motif
Other DBs
NCBI-ProteinID:
BAG43483
UniProt:
A0A0H3KEG8
LinkDB
All DBs
Position
1:1667763..1670219
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AA seq
818 aa
AA seq
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MSKYPYPIPSREEILGVLRTSDAPLAANDIAEALSIKRQEREGFFRRVAAMERDGQIRLD
KRGHYQLTHPSNFVAGRVQGHRDGYGFVIRDDGQDDLFLPNGEMQKVMHNDRVLARIVGY
DRRGRPEGHVVEVTERANKRVIGRLLNENGALIVAPEDKRIGHDILITQNVKKAKVGQVV
VVELTDFPSRHSQPLGRVVEVLGDIDDPGMEIEIAVRKYGVPHEFSAAALDEAAALPDKV
RPADLRFRVDLRDVPLVTIDGEDARDFDDAVYCEPTKVGRGDGFRLIVAIADVSHYVQPG
SGLDADALERSTSVYFPRRVIPMLPEKLSNGLCSLNPQVDRCVLACDIVITARGEIKAYQ
FYPAVIHSAARLTYTEVAAVLANTKGPEAARRAELLPHLQNLYGVYKALFAARQKRGAID
FDTTETYIVCNAQGKIEQIVPRQRNDAHKLIEECMLAANVCAADFLKRHKHPGLYRVHAG
PTPEKLENLRAFLRGMGLTLGGGETPHASDYAALMAQIRDRPDAQMLQPMLLRSMQQAVY
SPDNIGHFGLAYDAYAHFTSPIRRYPDLLTHRAIYAILSGKKYVPKAPEGFELNTALSPR
ARAMQQADDEARNRSRNNTAIWEELGLHCSANERRADEASRDVEAWLKCYFMRDKLGEEY
GGMVNGVTSFGIFVQLDTLFIEGLVHVTELGSDYFQYDEIKNELRGERTGIRYRLSDRVR
VQVSRVDLDARKIDFRLVRDTPVKAPRPVVASAPGAERGGPRVRALPQAEESTPHHKKAA
SAPSAAVKEARAARAAAKKKGGTAAKAPAKKVRARKKH
NT seq
2457 nt
NT seq
+upstream
nt +downstream
nt
ttgagcaaatatccgtaccccattccgagccgtgaagagattctcggcgtgctgcgtacg
agcgacgcgccgctggccgccaacgacatcgcggaagcgctgtcgatcaagcgccaggag
cgcgaagggttcttccggcgtgtcgccgcaatggagcgcgacggccagatccggctcgac
aagcgtggccattaccaactgacccatccgtccaatttcgtggccggccgcgtgcagggc
catcgcgacggctacggcttcgtcattcgcgacgacggccaggacgacctgttcctgccg
aacggcgaaatgcagaaggtgatgcacaacgatcgcgtgctcgcacggatcgtcggctac
gaccgccgcggccggccggaagggcatgtcgtcgaagtcaccgagcgcgcgaacaagcgc
gtcatcggccgtctgctgaacgagaacggcgcgctgatcgttgcgcccgaagacaagcgc
atcggccacgacatcctgatcacgcagaacgtcaagaaggcgaaggtcgggcaggtggtc
gtcgtcgagctgaccgatttcccgagccgtcattcgcagccgctcggccgcgtcgtcgag
gtgctcggcgacatcgacgacccgggcatggaaatcgaaatcgcggtgcgcaagtacggc
gtgccgcacgaattcagcgcggcggcgctcgacgaggccgccgcgctgcccgacaaggtg
cggccggccgatctgcggttccgtgtcgacctgcgcgacgtgccgctcgtgacgatcgac
ggcgaagacgcgcgcgacttcgacgatgccgtctactgcgagccgacgaaggtcggccgc
ggcgacggcttccggctcatcgtcgcgatcgccgacgtgtcgcactacgtccagccgggc
agcgggctcgacgccgacgcactggaacgcagcacgtcggtctacttcccgcgccgcgtg
attccgatgctgccggagaagctgtcgaacggcctctgctcgctgaacccgcaggtcgac
cgctgcgtgctcgcatgcgacatcgtgatcaccgcgcgcggcgagatcaaggcgtatcag
ttctatccggccgtgatccactcggccgcgcgtctcacgtatacggaagtcgcggcggtg
ctcgccaacacgaaggggccggaagccgcgcgtcgcgcggagctgctgccgcacctgcag
aacctgtacggcgtgtacaaggcgctgttcgcggcgcgccagaagcgcggcgcgatcgac
ttcgacacgaccgagacctacatcgtctgcaacgcgcagggcaagatcgagcagatcgtc
ccgcgccagcgcaacgacgcgcacaagctgatcgaggaatgcatgctggccgcgaacgtc
tgcgcggccgacttcctcaagcgccacaagcatccgggcctgtaccgcgtgcacgcgggg
ccgacgccggagaagctcgagaacctgcgtgcgttcctgcgcggcatgggcttgacgctc
ggcggcggcgagacgccgcacgcgagcgactacgcggcgctgatggcgcagatccgcgac
cggcccgacgcgcagatgctgcagccgatgctgctgcgttcgatgcagcaggccgtctac
agccccgacaacatcggtcacttcggcctcgcgtacgacgcctacgcgcacttcacgagc
ccgattcgccgctatccggacctgctcacgcaccgcgcgatctacgcgatcctgtcgggc
aagaagtacgtgccgaaggcgccggaagggttcgaactgaacaccgcgctgtcgccgcgc
gcgcgcgcgatgcagcaggccgacgacgaagcgcgcaaccgctcgcgcaacaacaccgcg
atctgggaagagctcggcctgcactgctcggcgaacgagcggcgcgcggacgaggcgtcg
cgcgacgtcgaggcctggctgaagtgctatttcatgcgcgacaagctcggcgaggagtac
ggcgggatggtgaacggcgtcacgtcgttcggcatcttcgtgcagctcgacacgctgttc
atcgaagggctcgtgcacgtgacggaactcggctccgactacttccagtacgacgagatc
aagaacgagctgcgcggcgaacgcacgggcatccgctatcggctgtcggaccgcgtgcgc
gtgcaggtgagccgcgtcgatctcgatgcacgcaagatcgacttccggctcgtgcgcgac
acgccggtgaaggcgccgcgtccggtcgttgcatcggcaccgggcgccgagcgcggcggc
ccgcgcgtgcgcgcgctgccgcaggcggaagaatcgacgccgcatcacaagaaggctgcg
agcgcgccgagtgccgcggtgaaggaagcgcgcgcggcgcgcgccgccgcgaagaagaag
ggcggcacggcggcgaaggcccccgcgaagaaggtgcgcgcccgcaagaaacactga
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