KEGG   Burkholderia multivorans DDS 15A-1: DM80_125
Entry
DM80_125          CDS       T03292                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
bmk  Burkholderia multivorans DDS 15A-1
Pathway
bmk02024  Quorum sensing
bmk03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bmk00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    DM80_125 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    DM80_125 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bmk03019]
    DM80_125 (hfq)
   03036 Chromosome and associated proteins [BR:bmk03036]
    DM80_125 (hfq)
Messenger RNA biogenesis [BR:bmk03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     DM80_125 (hfq)
Chromosome and associated proteins [BR:bmk03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    DM80_125 (hfq)
SSDB
Motif
Pfam: Hfq LSM Hfq_1 SelB_WH1
Other DBs
NCBI-ProteinID: AIO75997
UniProt: A0A1B4MUB3
LinkDB
Position
1:144322..144900
AA seq 192 aa
MANPAESHPQNDFINSARKERKRVEIYLVNGIRLTGCIESFDQYLVMLRTPVGLQGIYKR
AISTIQLDTGGSRPGGGPRGPRTGGRPGGREGGGHSPYGSHGGSREPREGYGSREPREGY
GSREPREGYGSREPREGYGSREPREGYGAPRENYGAPRDAGDASGGGSPSDTRGSNGPVI
VTRRRRIVPDGQ
NT seq 579 nt   +upstreamnt  +downstreamnt
atggccaatcccgcagaatcccatccgcaaaacgacttcatcaattccgcgcgaaaggaa
cgtaagcgcgtcgaaatctacctcgtcaacggcattcgtctgaccgggtgtatcgagtcg
ttcgaccagtatctggtgatgctgcgcacccccgtgggtctgcaaggcatctacaagcgt
gcgatttcgacgatccagctcgacacgggcggatcgcgccccggcggcggtccgcgcggc
ccgcgcacgggcgggcgaccgggcggccgcgaaggtggcggtcacagcccgtacggctcg
cacggcggctcccgtgagccgcgcgagggctacggctcgcgtgaaccgcgcgagggttac
ggttcccgtgaaccgcgtgaaggctacgggtcgcgtgaaccgcgcgagggttacggttcc
cgtgagccgcgcgaaggttacggcgcgccgcgtgaaaactacggtgcgccgcgcgacgcc
ggcgacgcgtcgggcggcggctcgccttccgatacgcgcggcagcaacgggcccgtcatc
gtgacgcgccgccgccggatcgtgccggacggccagtaa

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