Burkholderia multivorans DDS 15A-1: DM80_1336
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Entry
DM80_1336 CDS
T03292
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bmk
Burkholderia multivorans DDS 15A-1
Pathway
bmk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bmk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DM80_1336 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bmk03021
]
DM80_1336 (rpoC)
03400 DNA repair and recombination proteins [BR:
bmk03400
]
DM80_1336 (rpoC)
Enzymes [BR:
bmk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DM80_1336 (rpoC)
Transcription machinery [BR:
bmk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DM80_1336 (rpoC)
DNA repair and recombination proteins [BR:
bmk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DM80_1336 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Apocytochr_F_C
PYNP_C
Motif
Other DBs
NCBI-ProteinID:
AIO74876
UniProt:
A0A1B4TTI8
LinkDB
All DBs
Position
1:complement(1445273..1449514)
Genome browser
AA seq
1413 aa
AA seq
DB search
MKALLDLFKQVQQEEVFDAIKIGLASPDKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVIDPGMTPLKARQIMTEEDYYNKVEEYGDEFRAEM
GAEGVRELLRAINIDEQVEQLRTELKNTGSEAKIKKYAKRLKVLEAFQRSGIKPEWMILE
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIVRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPT
LKLHQCGLPKLMALELFKPFIFNKLEVMGVATTIKAAKKEVENQTPVVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQMEA
RTLMLASNNVLFPANGDPSIVPSQDIVLGLYYATREAINGKGEGLTFTGVSEVIRAYENK
EVELASRVNVRITEMVRNEDKSEGAPEFVPKISLYATTVGRAILSEILPPGLPFSVLNKP
LKKKEISRLINTAFRKCGLRATVVFADQLMQSGFRLATRAGISICVDDMLVPPQKETIVG
DAAKKVKEYDRQYMSGLVTAQERYNNVVDIWSATSEAVGKAMMEQLSTEPVIDRDGNETR
QESFNSIYMMADSGARGSAVQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFIS
THGARKGLADTALKTANSGYLTRRLVDVTQDLVVVEDDCGTSNGVAMKALVEGGEVVEAL
RDRILGRVAVADVVNPETQETLYEAGTLLDETAVEEIERLGIDEVRVRTPLTCETRYGLC
ASCYGRDLGRGTLVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSN
GTVRFSPSMRYVTNAKGEQIVISRSGEALITDDIGRERERHKIPYGATLLQLDGAAIKAG
TQLATWDPMTRPIITEYGGTVKFENVEEGVTVAKQIDDVTGLSTLVVIDAKRRGSQASKS
VRPQVKLLDANGDEVKIPGTEHSVQIGFQVGALITVKDGQQVQVGEVLARIPTESQKTRD
ITGGLPRVAELFEARSPKDAGILAEVTGTVSFGKDTKGKQRLVITDLEGNQHEFLIAKEK
QVLVHDGQVVNKGEMIVDGPADPHDILRLQGIEALSRYIVDEVQDVYRLQGVKINDKHIE
VIVRQMLRRVQITDNGDSRFIPGEQVERSDMLDENDRMIAEGKRPASYENVLLGITKASL
STDSFISAASFQETTRVLTEAAIMGKRDDLRGLKENVIVGRLIPAGTGLAFHKARKAKEM
SDRERFDQIAAEEAFDFGTPSTPAEEPQHPAAE
NT seq
4242 nt
NT seq
+upstream
nt +downstream
nt
atgaaagctctgctcgatctattcaagcaagtccaacaggaagaagttttcgacgcgatc
aagatcggtctggcctcgcccgacaagatccgttcgtggtcgttcggcgaagtgaagaag
ccggagaccatcaactaccgtacgttcaagccggaacgcgatggtctgttctgcgcgaag
atcttcggtccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcctgaagcac
cgtggcgtgatctgcgagaagtgcggcgttgaagtgacgctggcgaaggtgcgtcgcgag
cgcatgggccacatcgagctcgcgtcgccggtcgcgcacatctggttcctgaagtcgctg
ccgtcgcgtctgggcatggtgctcgacatgacgctgcgcgacatcgagcgcgtgctgtac
ttcgaagcgtacgtggtgatcgatccgggcatgacgccgctgaaggcgcggcagatcatg
accgaagaggattactacaacaaggtcgaggaatacggcgacgaattccgtgccgaaatg
ggcgcggaaggcgtgcgcgaactgctgcgcgcgatcaacatcgacgagcaggtcgaacag
ctgcgcaccgagctgaagaacacgggctcggaagcgaagatcaagaagtacgcgaagcgc
ctgaaggtcctcgaggcattccagcgctcgggcatcaagcccgagtggatgatcctcgaa
gtgctgccggtgctgccgccggaactgcgtccgctcgtgccgctggacggcggccgtttc
gcgacgtcggatctgaacgacctgtatcgccgcgtgatcaaccgtaacaaccggttgaag
cgtctgctcgagctgaaggcacctgaaatcatcgtccgcaacgaaaagcggatgctgcag
gaagccgtcgactcgctgctcgacaacggtcgtcgcggcaaggcgatgacgggcgcgaac
aagcgtccgctgaagtcgctcgccgacatgatcaagggcaagggcggtcgtttccgtcag
aacctgctgggcaagcgcgtcgactactcgggccgttcggtcatcgtggtcggcccgacg
ctgaagcttcaccagtgcggtctgccgaagctgatggcgctcgagctgttcaagccgttc
atcttcaacaagcttgaagtgatgggcgtcgcgacgaccatcaaggcggcgaagaaggaa
gtcgagaaccagacgccggtcgtgtgggacatcctcgaagaggtgatccgcgagcacccg
gtgatgctgaaccgtgcgccgacgctgcaccgtctcggcatccaggcgttcgagcccgtg
ctgatcgaaggcaaggcgatccagctgcacccgctcgtctgtgcggcgttcaacgccgac
ttcgacggtgaccagatggccgtccacgtgccgctgtcgctcgaagcgcagatggaagcg
cgcacgctgatgctcgcgtcgaacaacgtgctgttcccggccaacggcgatccgtcgatc
gtgccgtcgcaggatatcgtgctgggtctgtactacgcgacccgcgaagcgatcaacggc
aagggcgaaggcctcacgtttaccggcgtgtcggaagtgatccgcgcgtacgagaacaag
gaagtcgagctcgcctcgcgcgtcaacgtgcggatcaccgaaatggtccgcaacgaggac
aagtcggaaggtgcgccggagttcgtgccgaagatctcgctgtacgcgacgacggtcggc
cgcgcgatcctgtcggaaattctgccgcccggcttgccgttctcggtgctgaacaagccg
ctgaagaagaaggaaatctcgcgcctgatcaacaccgcgttccgcaagtgcggtctgcgc
gcgacggtggtgttcgccgatcagctgatgcagtcgggcttccgtctcgcgacgcgcgcc
ggtatctcgatctgcgtggacgacatgctcgtgccgccgcagaaggagacgatcgtcggc
gacgccgcgaagaaggtgaaggaatacgaccgtcagtacatgtcgggtctcgtcaccgcg
caggaacgctacaacaacgtggtcgacatctggtcggcgacgtcggaagcggtcggcaag
gcgatgatggagcagctgtcgacggagccggtgatcgatcgcgacggcaacgagacgcgc
caggaatcgttcaactcgatctacatgatggccgactcgggtgcccggggttcggcggtg
cagattcgtcagctggccggtatgcgcggcctgatggcgaagccggacggctcgattatc
gagacgccgattaccgcgaacttccgcgaaggtctgaacgtgttgcagtacttcatctcg
acccacggtgcacgtaagggtctggctgatacggcactgaagaccgcgaactcgggttac
ctgacgcgtcgtctggtcgacgtcacgcaggatctggtggtcgtcgaggacgattgcggc
acgtcgaacggcgtggcgatgaaggcgctggtcgaaggcggtgaagtcgtcgaagcgctg
cgcgaccgtatcctcggccgcgtcgcggtcgcggacgtcgtgaacccggaaacgcaggaa
acgctgtacgaagcgggcacgctgctcgacgagacggcggtcgaggaaatcgaacgcctc
ggcatcgacgaagtgcgcgtgcgcacgccgctgacctgcgaaacgcgttacggcctgtgc
gcatcgtgctacggccgcgacctcggccgcggcacgctggtgaacgtcggcgaagcagtc
ggcgtgatcgcggcgcagtcgatcggcgaaccgggcacgcagctgacgatgcgtacgttc
cacatcggtggtgcggcatcgcgtgcggcagtcgcgtcgtcggtcgaggcgaagagcaac
ggtaccgtccgcttctcgccgtcgatgcgctacgtgacgaacgcgaagggcgagcagatc
gtcatctcgcgttcgggcgaggcgctgatcaccgacgacatcggtcgcgagcgcgaacgt
cacaagatcccgtacggcgcgacgctgctgcagctcgacggcgcggcgatcaaggccggc
acgcagctggcgacgtgggatccgatgacgcgtccgatcatcaccgagtacggcggtacg
gtgaagttcgagaacgtcgaggaaggcgtgacggtcgcgaagcagatcgacgacgtgacc
ggtctgtcgaccctcgtcgtgatcgacgcgaagcgtcgcggttcgcaggcgtcgaagagc
gtgcgtccgcaggtgaagctgctcgacgcgaacggcgacgaagtgaagatcccgggcacg
gagcactcggtgcagatcggcttccaggtcggcgcactgatcaccgtgaaggacggtcag
caggtgcaggtcggtgaagtgctcgcacgtatcccgaccgaatcgcagaagacccgtgac
attaccggtggtctgccgcgcgtggccgagctgttcgaagcgcgttcgccgaaggatgcg
ggcattctcgcggaagtcaccggtacggtgtcgttcggcaaggacacgaagggcaagcag
cgtctcgtcatcacggatctcgagggcaaccagcacgagttcctgattgcgaaggaaaag
caggtgctggtccacgacggtcaggtcgtcaacaagggcgaaatgatcgtggacggcccg
gccgatccgcacgacatcctgcgtctgcagggtatcgaggcgctgtcgcgctacatcgtg
gacgaagtgcaggacgtgtatcgtctgcagggcgtgaagatcaacgacaagcacatcgag
gtgatcgttcgccagatgctgcgtcgtgtgcagatcaccgacaacggcgattcgcgcttc
atcccgggcgagcaggtcgagcgttcggacatgctggacgagaacgaccgcatgattgcc
gagggcaagcgcccggcgtcgtacgagaacgtgctgctcggtatcacgaaggcgtcgctg
tcgaccgattcgttcatctccgcggcatcgttccaggaaacgacccgcgtgctgaccgaa
gcggcgatcatgggcaagcgcgacgatctgcgcggcctgaaggaaaacgtgatcgtcggc
cgtctgattccggccggtacgggtctcgccttccacaaggcacgcaaggcgaaggagatg
tccgaccgcgagcgtttcgaccagatcgcagcggaagaggcattcgacttcggcacgccg
agcacgccggcggaagagccgcaacacccggcagccgagtaa
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