Borrelia miyamotoi LB-2001: I871_02000
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Entry
I871_02000 CDS
T02797
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
bmo
Borrelia miyamotoi LB-2001
Pathway
bmo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bmo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
I871_02000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bmo03021
]
I871_02000
03400 DNA repair and recombination proteins [BR:
bmo03400
]
I871_02000
Enzymes [BR:
bmo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
I871_02000
Transcription machinery [BR:
bmo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
I871_02000
DNA repair and recombination proteins [BR:
bmo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
I871_02000
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AGT27373
LinkDB
All DBs
Position
complement(401059..404526)
Genome browser
AA seq
1155 aa
AA seq
DB search
MIKRVHLGQGKVEEILDLPNLIEIQLNSYEKFLQLKRLKNNKPLLNEGLESVFRDVFPMK
SSNGEVVLEYEKYYIDNDSINFTEKECKRKGQSYEAVLKIRLNLQFLTTGEIRQKDVYMG
TIPLMTDRGTFIVNGAERVIVSQIHRSPGVVFYKEKDLYYARIIPYRGSWLEFEIDSKKD
YLYVKIDRKKRILVTLFLRALGLDTREKIIETFYKIKKIEVNEDTKRDITGQYLAVDVDI
KENMSYRAGDKITLQDIEDFLQNGVKEIDLIDFDGYDSVPGKHFISSNIILNCFEKEDAY
FPLKDGVKELSREAVMLSVYSMLLPGEPISIDSAENDLRTVFFSEKRYDLGHVGRYKLSK
EFGLDDLTTSVLTMTDIVNTISHLLRIYDGHDVLDDIDHLGNRRVRSVGELLTNIYKGAM
SRVEKIARDRMSNKEVFSLKPQELISVKPIVSAVKEFFATSQLSQFMDQVNPLAELTHKR
RLNALGPGGLSRDRAGFEVRDVHYTHYGRMCPIETPEGPNIGLIVSLATYAKVNDYGFLE
TPYRKVINGKVTDEIKYLSAIDEEKKCIAQANAAVNSEGNYVNDLISVRVSGDYTTMIPE
NIDYMDVSPRQLISVSSALIPFLEHNDANRALMGSNMQRQAVPLLFPQPPIVGTGMERIV
AKDSGVVVKVKRSGVVVLATSNKIVIRPDDADDDNDLDEYELAKYERTNQDTSFNQSVLV
KEGQVVSKGEIIADGPATRYGELALGNNLLVGFIPWNGFNYEDAILISDRIVKEDLYTSV
HIKEFSIEVRETKLGPEKVTADIPNVSGKILSKLDENGIVRIGTYVKPGDILIGKVTPKS
EGDITPEFRLLTSIFGEKAKDVKNNSLKVPHGTEGTVIDVQRITKDDVGNLPPGVDEILK
VYIAKKRKLKEGDKMAGRHGNKGVVAKILPVEDMPYLADGTPLDICLNPLGVPSRMNIGQ
LMESQLGLAGKYLNEYYDVPVFESATNECIQEKLKKAGFNETSKEILYDGYTGEPFENEV
MVGIIYMLKLHHLVDDKMHARSTGPYSLVSQQPLGGKAQFGGQRLGEMEVWALEAYGAAH
TLQELLTVKSDDMSGRVKIYENIVKGIPTNVSGIPESFNVLMQELRGLGFDLSIYDDNGN
QIPLTEKEEELINKA
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
atgataaaaagggttcatctcggacaaggaaaagtagaagaaatcttagacttacctaat
ttaatcgaaatacaattgaattcttatgagaaatttttgcagcttaagagattaaaaaat
aataaacctttgctcaatgaaggccttgaatctgtttttagggatgtttttcctatgaaa
agtagcaatggtgaggttgtgcttgaatatgagaaatactacattgacaatgattctatt
aattttactgaaaaggaatgcaaaagaaagggccaaagttatgaggctgtattaaagata
agattaaatttgcagtttctaacaacaggagagataagacaaaaagatgtttatatgggg
actattcctttaatgactgatagagggacttttattgttaatggtgctgaaagagtaatt
gtatctcaaattcacagatcccctggggttgttttttacaaggaaaaagatttatattat
gctcgtattattccttatcgtggttcttggttggaatttgagatcgattcaaaaaaagat
tacctttatgttaagatagacaggaaaaaaagaatacttgttactcttttcttaagagct
ttgggtcttgatactagagaaaaaataattgaaactttttataaaattaaaaaaattgaa
gtaaatgaagatactaaaagagatattacgggtcaatacttagcggtagatgttgatata
aaagaaaatatgagttatcgggcgggagataaaataaccttgcaggatattgaagatttt
ctacaaaatggagtaaaggagatagatcttattgattttgatgggtatgacagtgttcct
ggaaaacattttattagttctaatattattttgaattgttttgaaaaggaagatgcttat
ttccctttaaaagatggcgttaaagaactttcaagagaagctgtaatgctttcggtttat
agtatgcttttgcctggtgagccaatatccattgatagtgctgagaatgatttaaggact
gtatttttttcagagaagagatatgatcttggtcatgtggggcgatataagctttctaaa
gagttcggccttgatgacttaacaacttccgttcttactatgacagatatagtaaataca
atatctcatcttttaagaatatatgatggacatgatgttcttgatgacattgatcatctt
ggaaatagaagagttcgttctgttggtgagttgcttacaaatatatataagggagcaatg
tctagggtagagaaaattgcaagggatagaatgtctaataaagaggtatttagtcttaaa
cctcaagaattaataagtgttaaacctattgtttctgctgttaaagaattttttgcaact
agtcagctttcacaatttatggatcaagttaatcccttggctgaattgacacataaaaga
cgtcttaatgctttggggcctgggggactctcaagggatcgtgcaggttttgaagtaagg
gatgtccattatacgcattatgggagaatgtgtcctattgagactcctgaagggccaaat
attggtcttattgtttctttggctacttatgctaaggtaaatgattatgggttcttagaa
actccttatagaaaggtgattaacggcaaagttactgatgagatcaagtatttatctgca
attgatgaggaaaaaaagtgcattgctcaggccaacgctgctgttaattctgagggtaat
tatgttaatgatttaatttctgttagagtttctggtgattatactacaatgattcctgaa
aatattgattatatggatgtttcacctagacagttgatttctgtttcttcagcgttaata
ccttttcttgaacataatgatgcaaatcgtgctcttatgggttccaatatgcaacgtcaa
gcagttcctttattatttccacagccacctattgttggtactggtatggaaagaatagtt
gcaaaggattctggtgttgttgttaaagtgaaaagatcaggtgtagttgtattggcaaca
agtaacaaaatagtgatcaggcctgatgatgctgatgatgataatgatttagatgaatat
gaacttgcaaaatatgaaagaacaaaccaggatacttcttttaaccagtcagttttagtt
aaggaaggtcaagtagttagtaagggtgaaataattgctgatggacctgctactagatat
ggagaattagcacttggaaataatttgttagttggttttattccttggaacggatttaat
tatgaagatgctatattaatttctgatcggattgtaaaggaagacctttatacttcagtt
catattaaagaatttagtattgaggtaagagaaaccaagcttgggcctgaaaaagttaca
gctgatattcccaatgttagtggaaagatactaagtaagcttgatgaaaatggaattgta
agaataggaacgtatgtaaagccgggtgatatcttaattggtaaagtaacgccaaagtca
gagggagatattactcctgaatttaggcttttgacatctatttttggtgaaaaggcaaaa
gatgttaagaataattcacttaaagttccacatggtacagaaggtactgtaattgatgtt
caaagaatcaccaaagatgatgttggtaatcttccacctggtgttgatgaaatacttaag
gtttatattgctaagaaaaggaaacttaaagaaggggataagatggcaggaagacatggc
aataagggtgtagttgcaaagattcttccagttgaggatatgccgtatcttgcggatgga
actcctcttgatatatgtttgaatcctttgggggtgccatctcgtatgaatattggacaa
ttaatggaatctcagcttggtcttgctggtaaatatcttaatgaatattatgatgttcct
gtttttgaatctgctacaaatgaatgtatacaagaaaagttaaaaaaggccggctttaat
gaaacatcaaaagagattttatatgatggatatacgggagaaccgtttgaaaatgaggtg
atggttggaattatatatatgcttaagctacatcatcttgttgacgataagatgcatgca
agatctacaggaccctattcacttgtgtctcagcaacctcttgggggaaaagctcagttt
ggtgggcaaaggcttggagagatggaagtttgggcacttgaagcttatggagctgctcat
actcttcaagaactcttaaccgtaaaatcagatgatatgtcaggtagagttaagatatat
gaaaatattgttaaaggtattcctaccaatgtatctggaattcctgaatcttttaatgtt
ttgatgcaggagttaagagggttagggtttgatttatcaatttatgatgataatggcaat
caaattcctttaacagaaaaggaagaggaattgattaataaggcttag
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