Borrelia miyamotoi LB-2001: I871_03240
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Entry
I871_03240 CDS
T02797
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bmo
Borrelia miyamotoi LB-2001
Pathway
bmo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bmo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
I871_03240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bmo03400
]
I871_03240
Enzymes [BR:
bmo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
I871_03240
DNA repair and recombination proteins [BR:
bmo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
I871_03240
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
Prefoldin_2
DUF4191
TsaE
Motif
Other DBs
NCBI-ProteinID:
AGT27566
LinkDB
All DBs
Position
complement(646908..650294)
Genome browser
AA seq
1128 aa
AA seq
DB search
MNIKKELTNRLHNNQNLKRMQQLIEKNLPFTLVGYEGFFKAFLINTIKEYSNNNKVILIV
KNENILDEIKNDLMQITDKIYELNYFSPLAYQGINSKSKIFRKRVNFLINFYENNPGIYI
VLLKSLLSKIPTKENLFKNIYTIKTGKIIHIENFENKLIRLGYEKTTRVTLPGEFTIKGE
IIDIYPFNKSEPIRISLHINKIEEIKSFNPLTQLKQDNDISEFNIIPTKEIIWDNASINK
LKHYIKENEYKKLFKTIETKYNVRAEEMFYPLVGDTYLSQEINEDTPTINFEISNLEEEI
KKIHKEYEKLYNQVIESKEKTISPKEIFINLKDLKLKTNIFFVKSPANTTTEELIEFKIE
NKCKFFSNIKLIKEEIKNWLNNGFKVIIAAESNSQKEKLKYIFKDLPKTIIEIFKISSSL
IINKEKIAIIIESDIFNRREKINKTFESSKTKIIDSFTEIEKNSYVVHINHGIGIFRQIK
RIKTSLLEKDYIEIEYADDEKLFIPIEQTHLIQKYIGNETQNIKLDKISSKTWEKKKAYT
KKRIDEIADHLVALYSERESIKGFKYPKDHELQLLFESEFPYDETSDQLTAISEIKQDMM
SSKVMDRLLCGDVGFGKTEVAMRTAFKAVMGNKQVAILSPTTILTEQHFNTFKQRFKNFP
IKITMMSRFTKKSKEKEIIQNLKTGKIDIIIGTHKILSKKITYKNLGLIIIDEEQRFGVR
EKEKLKEIKVSVDCLALSATPIPRSLHMSLIKLRDISVLKTPPKNRIKIETYVEKFSELL
IKHAIENELSRDGQVFFVHHNIQELESIKAMLEKIVPYARIATLHAKLTGNQIENVMHDF
INKSYQVLIATTIIENGIDIENANTIIINNANRFGLAQLYQLRGRVGRGSQKAFAYLLYK
ENLSLKENAIERLRAISESSELGSGFQIAIKDMEIRGVGNLLGREQHGEIESIGLDYYLT
MLNKAIEKRMGRKDFKEDKVIIEINYNGFIPDSYVNNEQDKILIYKKISSIQSEEENNKI
RDEIHDRFGPIPKELNNLFLLAELKIFAKKLNIVSLKERNGLLKIEYLNIKSIPAEKIMQ
IIKDNPTIIKINPEYKNSIFLNLKNIKASEKINCIYKNLNYLNNNKIR
NT seq
3387 nt
NT seq
+upstream
nt +downstream
nt
atgaatataaaaaaagaattaactaacaggttacataacaatcaaaatttaaaaagaatg
caacaactcattgaaaaaaatctaccttttacattagtagggtacgaaggattttttaaa
gcttttttaatcaacacaataaaagaatacagcaataataataaagttatattaatagtt
aaaaacgaaaatattttagatgagattaaaaatgacttaatgcaaattacagacaaaata
tatgaacttaattatttcagtccccttgcatatcaaggaatcaactcaaaaagtaagatc
tttagaaaacgagtaaatttcttaatcaatttttatgaaaataaccctggaatctacatt
gtcttgctaaagtctctacttagcaaaattcctacaaaagaaaatttatttaaaaacatt
tacacaattaaaacgggtaagataatacacatagaaaattttgaaaataagcttataaga
cttggatacgaaaaaacaacaagggttacattacctggagaatttacaataaagggtgaa
ataatagacatatacccatttaataaatcagaaccaataagaatttcactgcatattaat
aaaatagaagaaatcaaatcttttaatccccttactcaattaaaacaagacaatgatatt
tctgaatttaatatcattccaacaaaggaaattatttgggataacgcaagcataaacaaa
ttaaaacattacatcaaagaaaatgaatataaaaaactatttaaaacaatcgaaacaaaa
tataatgtaagagcagaagaaatgttttatccattagtaggagacacatacctaagtcaa
gaaataaacgaagatacacctactataaatttcgaaatatcaaatttggaagaagagatc
aaaaagatccacaaagagtatgaaaagctttataatcaagtaatagaatcaaaagaaaaa
acaatttcaccaaaagaaattttcataaatttgaaagatttaaaactaaaaaccaatata
ttttttgtaaaatcccctgcaaacacaacaacagaagaactcatagaatttaaaatcgaa
aataagtgtaaatttttttcaaacattaaacttataaaggaagaaataaaaaactggcta
aacaacggatttaaagtaattattgcagcagaatctaattcacaaaaagaaaaattaaaa
tatattttcaaggatctgccaaaaaccataattgagatttttaaaatatcaagctcactt
ataataaacaaagaaaaaatagccattattattgaatcagatatctttaatagaagagaa
aaaataaataaaactttcgaatcatcaaagacaaaaattattgattcatttactgaaatt
gaaaaaaatagttatgtagttcacatcaaccatggaattggaatattccgacagataaaa
agaatcaaaacaagtctccttgaaaaagactacattgaaattgaatatgcagatgatgaa
aaattatttatcccaattgaacaaacacaccttattcaaaagtatattggcaatgaaaca
caaaatataaaattagataaaatcagttcaaaaacatgggaaaagaaaaaagcttacaca
aagaaaagaattgatgaaattgccgatcatcttgttgcactttattcagaacgagaaagt
attaagggatttaaatatcctaaagatcatgaactgcaattattgtttgaatcagaattc
ccatacgatgaaacttcagatcaattaaccgcaatatcagaaatcaaacaagatatgatg
agttcaaaagtaatggacagacttttgtgcggcgatgttggatttggtaaaacagaagtt
gcaatgagaaccgcatttaaagctgtcatgggaaacaaacaagtagcaatactttctcca
acaacaattcttacagaacaacatttcaacacatttaagcaaagattcaaaaactttcca
atcaaaattacaatgatgagcaggtttacaaaaaaatcaaaagaaaaggaaatcattcaa
aacttaaaaacaggaaaaattgacataataattggaacacacaaaatactctctaagaaa
ataacatataaaaacttaggtctcattataattgatgaagaacaaagattcggagtaaga
gaaaaagagaagctaaaagaaataaaagtctctgttgattgccttgccctatcagcaact
ccaattccaagatctcttcatatgtcattaattaaactaagggacatttctgttttaaaa
actccacccaaaaacagaattaaaattgaaacttatgtagaaaaatttagcgagctatta
attaaacatgcaatagaaaatgagctttcaagagatggacaagttttttttgtgcatcat
aatattcaagaattagagtcaataaaagcaatgctagagaaaatagttccttatgcaaga
attgcaaccctccatgcaaaacttacaggtaaccaaattgaaaatgttatgcatgatttt
ataaacaaatcataccaagtactcatagcaacaacaataatcgaaaatggaatagatatt
gaaaatgcaaacacaataattattaacaatgcaaatagatttggacttgcacaactatac
caactgaggggcagagttggaagaggctcacagaaagcctttgcttacctcttatataaa
gaaaatttgagcttaaaagaaaatgcaattgaaagactaagagcaatatctgaatcctca
gaacttggatcaggatttcaaatagcaataaaagatatggaaataagaggtgttggaaat
ctacttggaagagaacaacatggagaaattgaatctattggtctagattactacttaaca
atgctaaacaaagcaattgaaaagcgaatgggaagaaaggatttcaaagaagacaaagtc
attattgaaatcaactataatggattcatacctgatagctatgtaaataacgaacaagat
aaaatattaatctataaaaaaatctcatccattcaaagtgaagaagaaaataataaaata
agagatgaaattcatgatcgatttggaccaatcccaaaagagctaaataacttatttcta
ttagcagaattaaaaatttttgcaaaaaaactcaatattgtaagccttaaagaaagaaat
ggattactcaaaatcgaatatttaaacataaaaagcattcctgctgaaaaaataatgcaa
attataaaagacaatcccaccataattaaaataaatccagaatataaaaattcaattttt
ctaaatttaaaaaatattaaagcatcagaaaaaattaattgtatatacaaaaatttgaac
tatcttaataacaacaaaataaggtga
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