Bombyx mori (domestic silkworm): 101740068
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Entry
101740068 CDS
T02817
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
bmor
Bombyx mori (domestic silkworm)
Pathway
bmor03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bmor00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101740068
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bmor03019
]
101740068
03041 Spliceosome [BR:
bmor03041
]
101740068
Messenger RNA biogenesis [BR:
bmor03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
101740068
Spliceosome [BR:
bmor03041
]
Complex B
Other components
Prp19-related factors
101740068
Complex C
101740068
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_12
TPR_8
TPR_15
NRDE-2
Mad3_BUB1_I
DHR-2_Lobe_A
ARM_TT21
ARM_TT21_C
TPR_10
PPR
Motif
Other DBs
NCBI-GeneID:
101740068
NCBI-ProteinID:
XP_037877856
UniProt:
A0A8R2M984
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Position
4:complement(13376648..13379828)
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AA seq
842 aa
AA seq
DB search
MPLLDGKEIDIFFSEEDLPYEEEILRNPFSVKHWLRYIEHKKTAPKHEINMIYERALKEL
PGSFKLWYNYLKLRRKQIRGRCIADPCYEDVNNCFERSLVFMHKMPRIWMDYCSFLTDQY
KITTTRKAFDSALRALPITQHHRIWPLYLNFLKKHNIPETAVRVFRRYLKLCPEDTEEYI
DYLTSIDKLDEAAVKLAQLVNNENFQSKHGKSNHQLWNELCELISKNPDQIHSLNVDAII
RGGLRRYTDQLGHLWNSLADYYVRSGLFERARDIYEEAIQTVTTVRDFTQIFDAYAQFEE
LSLSKKMEEVAKKTNPSEDDDIDLELRLARFEYLMERRLLLLNSVLLRQNPHNVAEWHKR
VKLYEGKPHEIIDTYTEAVQTVDPKLAVGKLFTLWVGFAKFYENNDQIEDARLIFEKATQ
VAYVKVDDLASVWCEWAEMEIRHENYEQALKLMQRATVLPSRKVAYHDDSETVQMRLYKS
LKVWSMYADLEESFGTFKSCKAVYDHIIDLKIATPQIIINYGLFLEEHNYFEEAFRAYEK
GIALFKWPNVYDIWNTYLTKFLKRYGGSKLERARDLFEQCLEHCPNEFAKSIFLLYAKLE
EEHGLARHAMSVYERATTAVLPEEMFEMFNIYIKKAAEIYGVPKTRQIYEKAIETLPEEK
AREMCVRFSEMETRLGEIDRARAIYAHCSQMCDPRITADFWNTWKEFEVRHGNEDTMREM
LRIKRSVQATYNTQVNMMSAQMLSSAAQAAGTISDLAPGMKDGMRMLEAKAAEMAVQSKG
NILFVRGETQGLKESSDKVVNPDEISIDEESDHSDDDAEEDPIQKKDVPTAVFGGLVKDN
ED
NT seq
2529 nt
NT seq
+upstream
nt +downstream
nt
atgcctcttctagacggaaaagaaatcgacatattcttcagtgaagaagatcttccgtat
gaagaggaaatcctaagaaatccattttctgtcaaacattggcttaggtacattgaacac
aagaaaactgcacccaaacatgaaattaatatgatatatgaacgagctttaaaagaatta
ccaggatcttttaaactttggtataactatcttaaattaagaagaaaacaaataagaggt
cgctgtatagctgacccatgctatgaagatgtaaacaattgctttgaaaggtctttagta
tttatgcacaaaatgcctagaatatggatggattactgttcattcttaacagatcagtat
aaaataactacaacaaggaaagcgtttgacagtgctcttagagctttaccaataactcaa
catcataggatatggcctctttacttaaatttcttgaagaaacacaatatacccgaaaca
gctgtaagagtgtttcgtaggtatcttaaattatgtcctgaagatactgaagagtatatt
gactacttaacttcaatagataaattagatgaagctgcagtcaaattggctcaactagtt
aataatgagaattttcaatcaaaacatggaaagtcaaatcatcaactttggaatgaatta
tgtgaattgatatcaaagaatcctgatcaaattcattctctgaatgtcgacgctattatc
agagggggattaagacgttacactgatcagctaggccacctgtggaactctcttgcagac
tattatgttcgaagtggtctttttgaaagagccagagacatttatgaagaagctatacaa
actgtgactacagtgagggattttacacaaatatttgatgcttatgcacaatttgaggaa
ttaagtcttagtaaaaaaatggaagaagttgccaagaaaactaatccaagtgaagatgat
gatattgatttagaattgagacttgccagatttgagtatcttatggaaagaaggctgtta
ctgcttaattcagttctacttagacaaaatccacataatgtggctgaatggcataaaaga
gtcaaattatatgaaggtaaaccccatgaaataatagatacatatactgaagcagtgcaa
actgtagaccctaaattagctgttggtaaacttttcacactgtgggttggatttgcaaaa
ttttatgaaaacaatgaccaaattgaagatgccagattaatttttgaaaaagctacacag
gtagcatatgttaaagtagacgatttagcttcagtttggtgtgaatgggctgaaatggaa
atcagacatgaaaattatgagcaagccctaaaattaatgcaaagagccactgttttacca
agcagaaaagtagcatatcatgatgattctgaaactgtgcaaatgaggttgtataaatca
ctaaaggtttggtccatgtatgctgacttagaagagagttttggtacattcaaatcttgc
aaagctgtgtatgatcatattatagatttaaaaattgctactccacaaattattatcaat
tatggattatttttagaagagcataattactttgaagaagcttttagagcatatgaaaag
ggtattgccttattcaagtggcctaatgtgtatgatatttggaatacatatctaacaaaa
tttttaaaaagatatggtggttcaaaacttgaaagagcaagagatttatttgagcaatgt
cttgagcattgtcccaatgaatttgcaaagtctattttcttattatatgcaaaattggaa
gaagagcatggtttagctagacatgcaatgtctgtatatgagagagctactactgccgtt
ctacctgaagaaatgtttgaaatgttcaatatttatattaaaaaagctgctgaaatttat
ggagttcctaaaacacgacagatttatgaaaaggctattgagactcttcctgaagagaag
gctagggaaatgtgtgttcgcttctcagaaatggaaactcgcctaggtgaaattgataga
gctcgggcaatatatgcacactgtagtcaaatgtgtgatcctagaattacagctgatttt
tggaacacttggaaagaatttgaagttaggcatggtaatgaagatacaatgagagaaatg
ttaagaattaaaagaagtgtgcaagccacatataatacacaggtgaatatgatgtctgca
caaatgttgagttctgcagcacaggcagctggtactatatcagatttagcaccaggtatg
aaagatggaatgagaatgcttgaagccaaagcagctgaaatggcagtacagagtaaaggc
aacattctatttgtgagaggagaaacccaaggacttaaagagagttctgacaaagtagtg
aatcctgatgaaatatcaattgatgaagaatccgatcacagtgatgatgatgctgaagag
gatccaatccaaaagaaagatgtaccaactgctgtttttggaggacttgtcaaggataat
gaagactag
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