KEGG   Bombyx mori (domestic silkworm): 101740129
Entry
101740129         CDS       T02817                                 
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
bmor  Bombyx mori (domestic silkworm)
Pathway
bmor03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:bmor00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    101740129
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:bmor03041]
    101740129
Spliceosome [BR:bmor03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    101740129
 Complex C
   U5 SnRNP specific factors
    101740129
SSDB
Motif
Pfam: WD40 WD40_CDC20-Fz WD40_Prp19 WD40_WDHD1_1st Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 WDR55 Beta-prop_EML_2 EIF3I WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_1st Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_EML Beta-prop_EIPR1 Beta-prop_IFT122_1st WD40_RFWD3 NBCH_WD40 ANAPC4_WD40 Beta-prop_SCAP WDR90_beta-prop_4th Beta-prop_SPT8 Beta-prop_RIG_2nd Beta-prop_DCAF4 Beta-prop_IFT140_1st Beta-prop_WDR19_1st eIF2A Beta-prop_WDR75_2nd WD_LRWD1 Beta-prop_HPS5 Beta-prop_WDR35_TULP_N Beta-prop_Vps41 Beta-prop_NWD2_C
Other DBs
NCBI-GeneID: 101740129
NCBI-ProteinID: XP_004923945
UniProt: A0A8R1WFC7
LinkDB
Position
3:1116231..1122024
AA seq 349 aa
MPDIETKRKAEDVSLVPSKRVRHEISVVGTREKAVVTSSVPRTSNLYAPIMLLEGHQGEI
FTGKFHPEGKHLASAGFDRQILIWNVYGQCENVMVMKGHTGAIMQLCFSPDGSHLYTGAT
DNTVAVWDVPTGTRIKKLKGHANFVNSVSGARRGPELLVSASDDNTIKLWDARKRNPVAS
FDSSYPVTSVLFNDTAEKILSSGVDNVIKMWDIRNNQISLKIKGHTDTVTGLSLSWDGAY
LLSNSMDNTLRIWDVRPFAPTERCVKLMSGHQHNFEKNLLRCAWSQDGSKVSAGSSDRFL
YVWDTTSRRVLYKLPGHIGSVNDVDFHPNEPIVLSVSSDKQIYLGEIEN
NT seq 1050 nt   +upstreamnt  +downstreamnt
atgccagatatagaaactaaaagaaaagcagaggatgtgtctcttgtaccctccaagcga
gtacggcatgagatctcagtagtcggcaccagagaaaaggcagttgttacttcatctgtt
ccacgaacatcaaacttgtatgcgccaattatgttgttggaaggacaccaaggagaaatt
ttcacaggcaaatttcatcctgaaggcaaacatttggcttctgcaggctttgacagacaa
atattaatatggaatgtgtatggtcaatgcgagaatgtgatggtgatgaaaggtcacacg
ggagcaataatgcagctttgcttctcacctgatggttcacatttgtacactggagctacg
gacaatactgtagcagtatgggacgtacccaccgggactagaatcaagaagttaaagggt
cacgctaactttgtgaactctgtttcaggagcaagaagaggtccagaactcttagtttca
gcttcagatgataacaccataaaattatgggatgcaaggaaaaggaatccagttgcatcg
tttgacagttcatatccagtcacaagtgtactcttcaatgatacagctgaaaaaatttta
tccagcggtgtggacaatgtcatcaaaatgtgggatataaggaataatcagatttccttg
aaaataaaaggacatacagacacggttacaggattatcattgtcatgggatggtgcatat
ctcctgtccaattcaatggataatacactccgtatttgggacgttagaccgtttgcacca
acagaacgctgtgtcaaattaatgtctggccaccaacacaactttgagaaaaatctgctc
agatgtgcatggtctcaggatggctccaaggtgtcagcaggttcttcagatcgtttccta
tacgtttgggacacaacatccagaagagttctttacaaattgcctggacacataggatcc
gtcaatgatgtggactttcatccaaacgaacccatagtgttatcagtgtccagcgataaa
cagatttatttgggagaaattgaaaattga

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