Bombyx mori (domestic silkworm): 101742443
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Entry
101742443 CDS
T02817
Name
(RefSeq) 3'-5' RNA helicase YTHDC2
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
bmor
Bombyx mori (domestic silkworm)
Brite
KEGG Orthology (KO) [BR:
bmor00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bmor03041
]
101742443
Enzymes [BR:
bmor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101742443
Spliceosome [BR:
bmor03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
101742443
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HA2_C
OB_NTP_bind
R3H
Helicase_C
YTH
DEAD
Ank_2
AAA_19
AAA_22
AAA_25
Ank
HA2_N
nSTAND3
Ank_4
Cas3-like_C_2
T2SSE
Ank_5
SRP54
AAA_14
UvrD-helicase
NACHT
AAA_16
Motif
Other DBs
NCBI-GeneID:
101742443
NCBI-ProteinID:
XP_012544932
UniProt:
A0A8R2G7C5
LinkDB
All DBs
Position
21:complement(13523825..13545190)
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AA seq
1315 aa
AA seq
DB search
MSSKKGKRSSGNKHFPIAESVSIALKIQLDKFISDDNETELKFPSFLSAQERGFIHETVV
KLGLKSKSRGKGVNRYLTVYKRVGSSIIQNDAKLILDSNMRCSIAELSNTFPITNKEKDD
LSSCPEKERSPQLSHKSLGQLNNGVAQIPNTTYNPDLLKFREKLPVYEQRQDLMNAIVHN
QVIIVAGATGCGKTTQLPQLVLEYCQQRGLPARLYCTQPRRISAVSVAERVAYERMEKIG
QSIGYQIRLESRVSPRTVLTYCTNGVLLRTLMGGDSALTGVTHILVDEVHERDKFSDFLL
IALRDALPKHKDLKLVLMSATMDTQIFSRYFNNCPVITIPGRLHEVQRYYLEDVLKITKY
RTPKMVQVEKELKNKLKSGRSYWSQLETQKAEDGPSKEVKEEKENVLDAGLQADMDEFID
ECFKEGSLDSFCQLLYMYLSEGVPVQCAHSRSGRSGLMAAAARALPETLHQLLHMGADPS
AKDKDGKTAYDYAVDSGHAESAKLLATFNLTEDSKENLEDNDGDNFLLDVYHHTFSEELI
DHDLMLALIKYIHVTLPKGSILVFLPGYDDIVTLRDMIQSCPEMNAQKYQMFTLHSNMQT
ADQKKVFNALPNARKIIVSTNIAETSITIDDVVFVVDSCKVKEKYYESNGGVCTLQCVWS
SRACCQQRAGRAGRTKPGHCFHMCSKRRFQTLPLNSVPEILRVPLQELCLHTKLLAPGNT
PIADFLSKALEPPSFLAVRNAVTLLKTIGALTPMEDLTEIGQHLLDLTVEPKLGKMLLYA
CVMKCLDPILTIVCSLANKEPFQISLNPENRKRGSAARKEFAADSYSDHMALLRAFQAWQ
TARANGNERAFCTKNLICGATMEMIVGYRSQLLAQLRALGLVKARGSGDIKDVNLNSEKW
HVVKAVLVSGLYPSIARVDRDTGTLRTSKEVKVAFHPSSTLHKGGGITGSQKSVINVPTD
WVVFEEISRAGRFCFIRCNTLVTPLTVALFGGPLRLPPGALTQRANPPGLSSDSDSEADE
SNASPDTAVLALDDWMAFTADASDAISVCYLRQKLCALVIRRMSNPAKPTTPLDDQILNT
VVHILGAEEKNVGLSQPSGIGQRPKPLTLDSPNWRMRVEEDQYRHDKYYPQYSQPEYQNT
FYPNYFRNGQGRPGWRGDVMPQGFSPQYNGPKSPMSPNGKVMMPNMEKYGEGAEGNAKQF
MIKVDELHALEAAYSTGSYVFAQNIAKRLQKAKMEGHRVTVFFSCPSANKFVGCANLLDV
SGALEWISTQHVPYHMVRHSCGGARGCVWREGELCGAGGGALLAHSRRRHARHPH
NT seq
3948 nt
NT seq
+upstream
nt +downstream
nt
atgagttctaaaaaggggaaacgaagttctgggaacaaacacttccccattgcggagtca
gtgagcatagcgctgaaaattcagttggacaagttcatcagtgatgacaacgaaaccgaa
cttaagtttccatcgttcttgtcggctcaagagcgcggttttattcatgagactgttgtt
aaattaggactcaaatcgaaatcgcgcgggaaaggtgtcaaccgctatttaacagtctac
aaaagagtaggatcatcaataatacaaaatgatgcaaaactcattttggactcaaacatg
aggtgtagcattgcagagctatcaaatacttttcccatcactaacaaagagaaggatgat
ttaagcagctgtcctgaaaaggaaagaagccctcaactctcgcacaagagtttggggcag
ctcaataatggagttgcacagattccaaacacaacatacaatccagatttattgaaattc
agagagaaacttcctgtttatgagcagaggcaagatttaatgaatgccatcgttcacaat
caggtcattatagtagccggagctacagggtgtggaaaaacaacacagcttccacaactg
gtgctggagtattgtcaacaacgtggtcttccagccagactgtactgcacccagccgagg
agaatttcagctgtgtctgtagccgaaagggtggcgtatgaaaggatggagaaaatagga
cagtcaattggctaccagatccgtctggagtcgagagtcagtcctcgaacggtgctcact
tactgtaccaacggggtgctgctcaggaccctcatgggaggagacagtgcacttactggc
gtgacccacatactggtggacgaggtccacgagcgcgacaagttcagcgacttcctgctg
atcgccctgagggacgcgctgcccaagcacaaggacctcaagctcgtgctcatgtccgcc
accatggacacgcagatattctccaggtacttcaacaactgcccggtgataaccattccg
gggcggctccacgaggtccagcggtactatctcgaagacgtactgaagataaccaaatac
agaacgccgaaaatggttcaagttgaaaaggaactgaagaataaattgaagtctggcagg
agctactggtcgcagctggagactcaaaaagccgaagacggaccaagcaaggaagttaaa
gaagaaaaggagaatgttctggatgcaggtctgcaggcagacatggacgagttcatcgat
gaatgcttcaaggaaggcagcttggactcgttctgccagctgctgtacatgtacctgtcg
gagggcgtgcccgtgcagtgcgcgcacagccgctcgggccgctcggggctcatggcggcg
gcggcgcgcgccctgcccgagacgctgcaccagctgctgcacatgggtgccgatccatcc
gccaaagacaaagacggcaagacggcatacgactacgccgtggacagcggacacgccgag
tctgccaagctactcgccaccttcaacctcaccgaggactccaaggaaaacctggaggac
aacgacggcgacaacttcctcctcgacgtctaccaccacaccttctccgaggaactcata
gaccacgatctgatgctggctctcataaagtacatccacgtcacgctgccgaaggggagc
atactggtgttcctcccgggctacgacgacatagtaacactgagggacatgatccagtct
tgtccggagatgaacgcccagaagtaccaaatgttcacgctgcacagcaacatgcagacg
gccgaccagaagaaggtgttcaacgcgctgcccaacgccaggaagatcatcgtctcgacc
aacatcgcggagacgtccatcacgatcgacgacgtggtgttcgtggtggactcgtgcaag
gtgaaggagaagtactacgagtccaacggcggcgtgtgcacgctgcagtgcgtgtggagc
tcgcgggcctgctgccagcagcgcgccggccgcgcgggcaggaccaagcccggccactgc
ttccacatgtgctccaagcgacgcttccagaccctgccgctcaactccgtgccggagatc
ctccgcgtgcccctccaggagctgtgtctgcacaccaagctgctggcgcccgggaacacg
cccatcgctgacttcctgtccaaagcgttggagcctccctcgttcctggccgtcagaaac
gcggtcacgttactgaagaccataggggctctgacccccatggaggacttgacggagatc
ggccaacatctactagacctgaccgtggagcccaagttagggaagatgttgctttacgcg
tgcgtgatgaagtgcctcgaccctatattgaccatagtgtgcagtctcgcgaataaagaa
cctttccaaatatctttgaaccctgaaaacaggaagagaggaagtgcggctcgaaaagag
ttcgcagccgacagctactccgaccatatggccttgttaagagctttccaagcttggcag
acagcgcgagcgaatggaaacgaaagagctttctgtacgaagaaccttatatgcggagcc
accatggaaatgatcgtgggatacagatctcaattgctggcccaattaagagcactggga
ctcgtcaaagctcgaggatcgggagacatcaaagacgtaaacttgaactctgagaagtgg
catgtggtgaaagctgtgctagttagcggcctgtatccgtccatagcccgcgtggacagg
gacaccggtactttgcgaacttcgaaagaagtcaaagtggcattccatcccagttccact
ttgcacaagggcggcggtatcacgggctcccaaaaatcggtcatcaatgttcctaccgac
tgggtcgtgttcgaagagatctcgcgagcgggacggttctgtttcattcggtgcaacacc
ctggtgacgccgctgaccgtggcgctgttcggcggcccgctgcggctgccccccggggcg
ctcacccagcgcgccaaccccccggggctgtccagcgactcggacagcgaggccgacgag
agcaacgcgtccccggacacggccgtgctcgcgctggacgactggatggccttcacggca
gacgcgtccgacgccatcagcgtttgctacctgcgacagaagctctgcgctttggtcatc
agacgcatgtcgaacccggccaagcccacgacgcccctggacgaccagatcctgaacacc
gtcgtccatatcctcggagccgaagagaagaacgtgggcttgagtcaaccgagcggcatc
ggccaacgtcccaaacccttgaccttagactcgccaaactggagaatgagggtggaagaa
gatcagtacagacacgacaagtactacccgcagtacagccagccggagtaccagaatacc
ttctacccgaactacttcaggaacggccagggaaggcccggctggaggggcgacgtgatg
cctcaaggcttctcgccgcagtacaatggccctaagagccctatgtctccgaacggaaag
gtcatgatgcccaacatggagaagtacggcgagggcgcggaggggaacgcgaagcagttc
atgataaaggtggacgagctgcacgcgctggaggccgcctacagcacgggcagctacgtg
ttcgcgcagaacatcgccaaaagactgcagaaagctaaaatggagggtcatcgtgtaaca
gtattcttctcgtgtccgagcgccaacaagttcgtgggctgcgcgaaccttctggacgtc
agcggagccctagagtggatctccacgcaacacgtgccttatcatatggttcgacactcg
tgcgggggggcgcggggctgcgtgtggcgcgagggggagctgtgcggcgcggggggcggc
gccctgctggcgcacagccggcgccggcacgcgcgacacccgcactga
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