Bombyx mori (domestic silkworm): 101743187
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Entry
101743187 CDS
T02817
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
bmor
Bombyx mori (domestic silkworm)
Pathway
bmor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bmor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101743187
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bmor03019
]
101743187
03041 Spliceosome [BR:
bmor03041
]
101743187
03009 Ribosome biogenesis [BR:
bmor03009
]
101743187
03016 Transfer RNA biogenesis [BR:
bmor03016
]
101743187
Enzymes [BR:
bmor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101743187
Messenger RNA biogenesis [BR:
bmor03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
101743187
Spliceosome [BR:
bmor03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
101743187
Complex C
U4/U6.U5 tri-SnRNP related factors
101743187
Ribosome biogenesis [BR:
bmor03009
]
Eukaryotic type
Pre-60S particles
Helicases
101743187
Transfer RNA biogenesis [BR:
bmor03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
101743187
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ATPase_2
Motif
Other DBs
NCBI-GeneID:
101743187
NCBI-ProteinID:
XP_004930077
UniProt:
A0A8R2ASX2
LinkDB
All DBs
Position
5:13283996..13297812
Genome browser
AA seq
1030 aa
AA seq
DB search
MSDINSLFDCFDETPITEAAIQLPNVKNVEKPNLEELTAAGNKRAHDDIQYADTSVSKKP
REEEEDSELITDINVDLLQSRIVIHTLETHEGCTHEVAIPPNQEYAPLLPLTTEPVKQYS
FILDPFQKEAILCIDNLQSVLVSAHTSAGKTVVAEYAIALSLKNKQRVIYTTPIKALSNQ
KYREFSEEFHDVGLITGDVTINPSASCLIMTTEILRNMLYRGSEIMREVGWVVFDEIHYM
RDKERGVVWEETLILLPDNVHYVFLSATIPNARQFAEWVCRLHSQPCHVIYTEYRPTPLQ
HYIFPAGGDGIHLVVDEKGIFKEDNFNTAMTVLNNAGEAAKGDQRGRRGGPRDKNQTNIF
NIVKMIMERNFAPVIIFSFSKKDCELYALQMAKLDFNTIEEKKLVDEVFSNAMDVLSEED
RKLPQVENVIPLLRRGIGIHHGGLLPILKETIEILFGLGLIKALFATETFAMGLNMPART
VVFTNCQKFDGKEVRFISSGEYIQMSGRAGRRGLDDKGIVILMIDEKVTPTVVKGMVQGK
ADPINSAFHLTYNMVLNLLRVEEINPEYMLERSFFQFQNQAAIPDLIDKVKAKQKQYDAL
SVNEENSVASYSTIRTQLDLLGDQFRSFITKPEYLKPFLQPGRLVKVKTEKYEYDWGIIV
NFRHKSNKGKKGQEENPLTAEPAIIVDILLHVKTATGGDGETNVPCPPGESGDVQVVPVV
HTLIYQISSLRVYYPKDLRPSDNRKSVLKTIGEVKKRFPDGPPLLNPINDMKINDSVFKQ
CVDRIKLLEERLYSHPIHTDKNRSALTAAYDKKQELYEELQNAKAELKKAKSILQMDELK
KRKRVLRRLGYCTAADVIEMKGRIACELSSADELLLTELIFNGVFNALSPEQSAALISCF
VCDENSTQASVSGEELRGVLRQLQEYARRIAKVSIDSKMDLDEDTYVSKFKCTLMDVVLS
WAKGASFLQICKMTDVFEGSIIRCMRRLEEVLRQLCQAAKNIGNTDLENKFSDAIKMLKR
DIVFAASLYM
NT seq
3093 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacataaatagtttgtttgactgttttgatgaaacaccaataactgaagctgcg
attcagctgccaaatgttaaaaatgttgaaaaaccaaacttggaagagttgactgctgct
ggaaataagcgtgcacatgatgacatccagtacgctgatacctctgtatcaaaaaagcct
cgcgaagaagaggaagactctgaattgattaccgacataaatgttgatctgctccaatct
cgtatagtgatacacacgctagaaactcacgagggctgtacacatgaagtggcaatacca
cctaatcaggaatatgctcctcttttaccactgacaactgaacctgtaaagcagtacagt
ttcatattggatccgtttcaaaaagaagcaatattgtgtatagataatttacaatctgta
cttgtatcagctcacacgtctgctggcaaaacagtggttgctgagtatgccatagctcta
tcactaaaaaacaagcagagagtaatatacacaacccctattaaagctctttcgaatcaa
aaatatagagagttctcagaggagtttcatgatgttggtttaataactggtgatgtaact
atcaatccctctgcttcatgtcttatcatgacaactgagattctcaggaacatgttgtat
agaggttcagaaattatgagagaagttggttgggttgtgtttgatgagattcattacatg
agagataaggagagaggtgtcgtttgggaagaaacactcatccttctgccggacaatgtg
cattatgtatttttgtctgcaactatacctaatgcacgtcagtttgccgagtgggtctgt
cgcttgcattcccagccttgtcacgtcatttatacagaatacagacccactccactgcaa
cactacattttcccagccggtggtgatggaatacatttggttgttgatgaaaagggtata
ttcaaggaagataacttcaacacagcaatgacagtgctgaacaatgcaggtgaagcagca
aaaggcgaccaacgtggtagacgcggcggaccccgggataaaaatcagaccaatattttt
aacattgtcaaaatgattatggaaagaaatttcgctcccgtgatcatattcagcttcagt
aaaaaggattgcgaactatatgccctacagatggcgaaactggacttcaacacaattgaa
gaaaaaaaactagtggacgaagtgtttagcaacgcaatggatgttttaagtgaagaggat
cggaaattaccacaagtagagaacgttatacctttgttgaggcgcggcattggcatacat
catggaggtctactgcctatactgaaggaaactattgaaatattattcggcttaggactc
atcaaggctttatttgctactgaaacatttgctatgggattgaacatgcctgcgagaacg
gtagtgtttaccaactgtcaaaagtttgacgggaaggaagttagatttatatcgtcaggt
gaatatattcagatgtctggtcgcgctggtcggagaggtctcgacgacaagggtatcgtt
atattgatgatcgacgagaaggttacgcccactgttgtcaaaggcatggtgcaagggaaa
gctgaccctattaattctgcattccatctcacttataatatggttcttaatctactgcgt
gtagaggaaatcaatccggaatatatgctggaaagaagtttcttccagtttcagaatcaa
gcagccataccggatctgatagacaaggtcaaagcaaaacagaaacaatacgacgccctg
tccgttaacgaggagaactccgtagcttcatactccaccatcagaactcagctagatttg
ctcggggaccagtttcggtcgttcataactaagccggagtacttgaagccttttttgcaa
ccgggaagacttgtcaaggtgaaaacagagaaatacgaatacgactggggcatcatagtg
aacttcagacataaatcgaacaaaggcaagaaaggacaagaagagaatcctttgacggcc
gagcccgccattattgtcgacatcctactgcacgtgaagacggcgaccggcggcgacggc
gagaccaacgtgccgtgtccgcccggcgagtctggcgacgtacaagtggttccagtcgta
cacacactaatataccagatcagttctcttcgggtgtactatcctaaggacttgaggcct
tcggacaatcggaaatctgtattgaagactataggcgaggtgaaaaagaggttccccgat
ggtcccccgctgttgaatcccattaatgatatgaaaattaatgactcagtgtttaaacaa
tgcgtcgatagaatcaagttattggaagaaagactatactcacatccgatccatacagac
aaaaacagaagcgccctgacagctgcttacgacaagaaacaagagttatatgaagagcta
cagaacgctaaagcggaactgaagaaggcgaagagcatactgcagatggacgagctgaag
aagagaaaacgggtgctgaggcggctcggctactgcaccgccgccgacgtcatcgagatg
aagggacgcatcgcctgcgagctcagcagtgcggacgaactgctgctaacggagttgata
ttcaacggggtgttcaacgcgctgtctccggagcagagcgcggcgttgatcagctgcttc
gtttgcgacgagaactccacgcaggccagcgtctccggcgaggagctgcgcggcgtgctc
aggcaactacaggaatatgcccgacgaatagcaaaggtatcgatcgattctaaaatggat
ttggatgaagatacttacgttagtaaatttaaatgtacactcatggacgtggtcctgtca
tgggccaaaggagcttcgttcttgcagatatgcaagatgactgatgtttttgaaggttca
ataataagatgtatgagacgtttggaggaggtgttgcgacagctgtgccaggctgccaag
aacattggcaacaccgacttggagaataaattcagtgacgcgatcaaaatgctcaagagg
gacattgtgttcgcagccagtctttatatgtag
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