Bombyx mori (domestic silkworm): 101745099
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Entry
101745099 CDS
T02817
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
bmor
Bombyx mori (domestic silkworm)
Pathway
bmor03020
RNA polymerase
bmor03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bmor00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
101745099
09124 Replication and repair
03420 Nucleotide excision repair
101745099
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bmor03021
]
101745099
03400 DNA repair and recombination proteins [BR:
bmor03400
]
101745099
Enzymes [BR:
bmor01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
101745099
Transcription machinery [BR:
bmor03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
101745099
DNA repair and recombination proteins [BR:
bmor03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
101745099
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
DUF3137
Motif
Other DBs
NCBI-GeneID:
101745099
NCBI-ProteinID:
XP_012549218
LinkDB
All DBs
Position
5:10072443..10082017
Genome browser
AA seq
1896 aa
AA seq
DB search
MATANDSKAPLRQVKRVQFGILSPDEIRRMSVTEGGIRFPETMEGGRPKLGGLMDPRQGV
IDRSSRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKLLVSPTNP
KIKEVIMKSKGQPRKRLTYVYDLCKGKNICEGGEDMDIGKEGEEGKRGSGHGGCGHYQPS
IRRQGLELTAEWKHANEDTQEKKIFVSAERVWEILKHITDEDSFILGMDPNFARPDWMIV
TVLPVPPLCVRPAVVMFGSAKNQDDLTHKLADIIKANNDLEKNEQSGAAAHVLAENIRML
QFHVATFVDNDMPGMPKAMQKSGKPLKALKARLKGKEGRIRGNLMGKRVDFSARTVITPD
PNLRIDQVGVPRSIAQNMTFPELVTPFNLDRMQELVRRGNAQYPGAKYIVRENGERIDLR
FHPKSSDLHLLYGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTS
PYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTK
RDVFLTKEQVMNLLMFLPTWDGKIPQPCILKPQPLWTGKQIFTLIIPGPVNMIRTHSTHP
DEEDDGPYKWISPGDTKVVVEHGELLMGILCKKSLGASAGSLLHICMLELGHETAGRFYG
NIQTVINNWLLLEGHSIGIGDTIADPQTYQEIQRAIVKAKDDVIEVIQKAHNMELEPTPG
NTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ
QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDT
AVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLAGETVEFQNLPTVK
LSNKAFEKKFKFDSSNERYLKRIFSEDIVRELTESGSVIADLESEWEQLSKDRETLRQIF
PTGESKVVLPCNFKRMIWNAQKTFHINKRIPTDLSPIKVIKGVSDLLKKCVIVAGDDRLS
KQANENATLLFQCLVRSTLCTKFVSEEHRLSSVAFEWLIGEIEARFQQAQVNPGEMVGAL
AAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARD
AEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDPAKISPW
LLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNNEESKFQ
DHDEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIAKVYMHLPQTEAKKRITITEQGEFK
AIAEWLLETDGTSLMKVLSERDVDPIRTFSNDICEIFQVLGIEAVRKSVEKEMNAVLQFY
GLYVNYRHLALLCDVMTAKGYLMAITRHGINRQDTGALMRCSFEETVDVLLDAASHAEVD
PMRGVSENIIMGQLPRMGTGCFDLLLDGEKCKEAMGGLGGAEVGMYFGVGTPSMSPLMTP
WSTQNTPGYGSSVWSPCQVGSSMTPGGPSFSPSNASDASGLSPAYSNAWSPQPGSPGSPG
PPLSPYSSPAGASPSYSPLNPVYAPASPSITPTSPHYSPASPSYSPTSPNYSPTSPIYSP
TSPSYSPTSPGYSPTSPLYSPASPRYSPSSPNYSPASPAYSTTSNFPTTSPNYSPSSPSY
SPTSLSYSPTSPGYSTSPGYSPSSPRYSPNSPVYSPTSSNYSPSSPNYTSGSVYSPTSPT
YSPTSRSYSPSSPSYSQSSPNYSPSSPNYSPTSPSVAGGSPTYSPTSQQYSPTSPQYSPT
SPGYSSTSQHPSSTRYSPSSPSSPNYSPSSHNYSPSSPRYSPGSSKYSPTSPTFTPTSPN
YSPSSPAYSSTGGPSTYSPTSPTYSSTSPNYDDGDD
NT seq
5691 nt
NT seq
+upstream
nt +downstream
nt
atggcgacggcgaatgattctaaggcgcctttgcgtcaagtaaaaagagtacagtttgga
atactatccccagatgaaattcgacgcatgtcagttactgagggagggattcgattcccg
gagaccatggaaggtggaagaccgaagcttggcggtcttatggatcctcgacaaggggta
attgacagaagctcacggtgtcaaacgtgtgctgggaatatgacagaatgtccaggacac
tttgggcacattgatttagctaaaccagttttccatattggtttcataacaaaaacaata
aaaatactcagatgtgtatgcttttattgttcaaagctgcttgtcagccctacaaatcca
aagataaaagaagttataatgaaatccaagggccaaccccgcaaacggttgacctatgtt
tatgatctgtgcaaaggaaaaaatatatgtgaaggtggtgaagacatggatattgggaaa
gaaggtgaagaaggtaaaagaggatctggtcatggtggttgtgggcattatcaaccctct
attagacgacaaggtctagagctcacagctgagtggaaacatgctaatgaagatacacaa
gaaaagaaaatttttgtctctgcagaaagagtatgggaaattttgaaacatataacagat
gaagattcatttattttgggtatggatccaaattttgcaagaccagattggatgattgtg
acggttttgcctgtccctccattgtgtgttcgtccagctgttgttatgtttggctctgcc
aaaaatcaagatgacttaacccacaagctagctgatataataaaagctaacaatgacttg
gaaaaaaatgagcagtctggagctgctgctcatgtccttgcagagaatataagaatgtta
caatttcatgttgctacttttgttgacaatgacatgcctggtatgccaaaagctatgcag
aaatctgggaagcccttaaaggctctcaaagccagattgaaaggaaaagaaggaagaatt
cgaggaaatctaatggggaaacgtgttgacttctcagctaggacagtaatcacacctgat
ccaaatttacgtatagatcaagttggggttcccagatcaattgctcaaaatatgacattc
ccagagttggtgactccatttaatcttgatagaatgcaagaacttgtccgaagaggaaat
gcacaataccctggggcaaagtacattgtaagagaaaacggagaaagaattgatttaaga
ttccatcctaaatcttcagatttacatttactctatggttacaaagtagaaagacatcta
agagatgatgaccttgttatatttaatcgtcaaccaactcttcacaaaatgagtatgatg
ggtcacagagttaaggtacttccttggtcaacgtttcgtatgaatttgagttgcacatca
ccttacaatgctgattttgatggagatgaaatgaatttgcatgttcctcaatcaatggaa
acaagggctgaagttgaaaatattcatataacacctagacaaattataactccacaggct
aataaacctgtaatgggtattgtgcaggacacattgactgccgttagaaaaatgactaag
agagatgtttttttaacaaaagaacaagtaatgaatcttcttatgtttttacctacatgg
gatggtaaaattcctcaaccttgcattttgaaaccacagcctttatggacaggtaaacaa
atattcactttaataatacctggtcctgttaatatgattcgaactcactctactcatcct
gatgaagaagatgatggtccttacaagtggatttctccaggagataccaaagttgttgta
gaacatggagaactactaatgggtattttgtgtaaaaagtcgcttggtgcatctgctggc
tctctgttgcatatttgcatgttggaattaggccatgaaactgctggacgattctacggt
aacattcagactgtcattaataactggcttctgttggaaggtcactcaattggtattggt
gacactattgctgatccacagacatatcaagaaattcagcgtgcaatcgtaaaagctaaa
gatgacgtaatagaagtcattcagaaagcccacaatatggaattggaacccacacctggt
aatacactaaggcagacctttgaaaatcaagtgaaccgtatcctcaatgatgctcgtgat
aaaacaggtggatctgctaagaaatcattaacagaatacaataatctcaaagctatggta
gttgctggctcgaaaggttcaaacattaatatttcacaagtcattgcttgtgtaggccaa
cagaatgttgaaggaaaacgaatcccatttggatttagaaaacgcaccttaccccacttt
attaaagatgattatggtcctgaatccagaggttttgttgaaaactcttatctagctggt
ctgactccttcagaattctattttcacgccatgggtggacgtgaaggtttaattgatact
gctgtaaaaactgctgaaactggatacattcaacggcgtctcattaaagccatggagtct
gtaatggtccactatgatggtacagttagaaactctgttggacaacttattcaattgagg
tatggtgaggacggtctcgcaggagagacagtagaattccagaacctgccgactgttaaa
ttgtcaaataaagcatttgaaaagaaattcaaatttgactcttccaatgagagatatctg
aagagaattttcagtgaagacatagtcagagagctaacagaatctggaagtgtcatagct
gaccttgaaagtgagtgggaacaactttctaaagacagagaaacattacgtcagattttc
ccaacgggagaatctaaggttgtattgccatgtaatttcaagagaatgatttggaatgct
cagaaaacattccacataaacaagagaataccaacagacttaagccctatcaaagttata
aaaggtgtatcagaccttctaaagaagtgtgtcattgtagctggtgatgatcgtttgtct
aagcaagccaatgagaatgctacattacttttccaatgcttagtgagatcaacactttgt
acaaaatttgtatctgaagaacatagattatctagtgtagcatttgaatggcttatcggg
gaaatagaggcaagattccagcaagcacaagtaaatccaggtgaaatggtaggcgcttta
gctgctcaatcacttggtgagccagctactcagatgacattgaataccttccattttgct
ggtgtatcatccaaaaatgtaacacttggtgtgcctcgtctgaaggaaatcatcaacatt
tctaagaaaccaaaggctccttctctaactgtatttttgaccggtggagcagccagagat
gccgaaaaagccaaaaacgttctctgtagattagaacatacaactttacgtaaagttact
gctaacacggctatttattatgaccctgatcctcagaatactgttattgcagaggaccaa
gaatttgtcaatgtttactacgaaatgcctgactttgatcctgcgaaaatttcgccttgg
ttattgcgtattgaactggaccgtaagagaatgaccgacaagaaattaacaatggaacag
attgctgagaaaattaatgctggttttggtgatgatctcaattgtatcttcaatgatgac
aatgctgaaaagttagttttgcgaattagaatcatgaataatgaagaaagtaaattccaa
gatcatgatgaagagacagtagacaaaatggaagatgacatgttcttaagatgtattgaa
gcaaacatgctgtctgatatgactttgcaaggcattgaggctattgcaaaagtgtatatg
catttaccacagacagaagctaagaaacgtataactataactgaacagggagagttcaaa
gctatagcagaatggttattggaaacagacggcacatctcttatgaaagtgctctcagag
cgtgatgtggatccaatcagaacttttagtaacgacatttgtgagatattccaagtgctt
ggaattgaagctgtacgaaaatccgtcgaaaaagaaatgaatgcggttttgcagttctac
ggtctatacgtgaattatcgacacttggcattgctttgtgacgtcatgacagcaaaaggt
tatcttatggccatcacacgtcacggcattaaccgacaggacactggtgctcttatgaga
tgttcatttgaggaaaccgtcgatgttttattggacgctgccagtcatgctgaagtggat
cctatgagaggagtatcagaaaatattataatgggacagttgccgagaatgggtactggt
tgcttcgatttattacttgatggcgagaagtgcaaggaagcaatgggcggtcttggaggc
gcagaagtgggaatgtatttcggtgtcggaacgccatctatgtcaccacttatgactccc
tggtctacacagaatacaccaggatatggaagcagcgtgtggtctccatgtcaagttggc
agcagtatgactcctggaggaccatcattctcgccatctaacgcatctgacgcatcagga
ctctcaccggcatacagtaatgcttggtcaccacaacctggttcaccaggatctcccgga
cctccgctttcaccttactcgtcgcccgcaggagcgtcaccatcttactccccattgaat
cctgtttacgctcccgcgtccccgagtattactccaacatcaccacattattcacctgcc
agtccttcttactctccaacttcacccaattattccccgacttcaccaatatactcgcca
acatcacccagctactcgccaacatcgcctggttattcgcccacatccccattatactcc
ccagcttctcctagatactctccgtcatctcccaactattcaccagcaagtccggcttat
tcaacaacttctaatttcccgacaacttcacctaactattctccatcaagtccttcgtat
tctcccacgagtctatcgtattctccaacgagcccaggttattccacatcccctggctat
tcgccctcgtcacctagatattcaccaaatagtcctgtctacagtcctacttcatcaaat
tattcgccttcgtctccaaattacacttctggatctgtttattcacctacgagtcctaca
tattcacctacttctcgctcatattctccatcatcaccgagctattcgcagtcttctcca
aattattcaccctcgtcaccgaattattctcctacttcgccctctgtggctggaggtagt
cctacatattcaccaacaagtcagcaatattctccaaccagtccacagtattctccgact
agtccaggctattcttctacatcacaacatcctagtagcactaggtattcgccgtcttcg
ccttcctcgcctaattattctccatcatctcacaattattcaccttcatctccccggtat
tcgccaggatcatcaaaatattccccgacatcgcctacttttactcctacttctcccaat
tattctccgagctctcctgcgtattcttccactggtggaccatctacctattctccaact
tcaccaacatattcatctacttcacccaattatgatgatggtgacgactga
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