Bombyx mori (domestic silkworm): 105842585
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Entry
105842585 CDS
T02817
Name
(RefSeq) uncharacterized protein LOC105842585
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
bmor
Bombyx mori (domestic silkworm)
Pathway
bmor03020
RNA polymerase
bmor03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bmor00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
105842585
09124 Replication and repair
03420 Nucleotide excision repair
105842585
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bmor03021
]
105842585
03400 DNA repair and recombination proteins [BR:
bmor03400
]
105842585
Enzymes [BR:
bmor01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
105842585
Transcription machinery [BR:
bmor03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
105842585
DNA repair and recombination proteins [BR:
bmor03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
105842585
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAN_1
PAN_2
PAN_4
DUF2125
ETC_C1_NDUFA5
RSS_P20
Motif
Other DBs
NCBI-GeneID:
105842585
NCBI-ProteinID:
XP_037871455
LinkDB
All DBs
Position
2:3414060..3477917
Genome browser
AA seq
2227 aa
AA seq
DB search
MTIINLNSFLIKMSILIILCPVLLAGVQTLTIDSQLGTSIEDCFIRLSIGEQLPSTAIYR
NVTELMTRECEQICKQDKQCQAYDYGVGAKGNATCNLSNIDEKEIKEKSILGRHPDYDVY
VRRFQCEQSPPSPMPLHDDPGPDEQKRPDNPDRPEGPLQRPVFRPDDEIFNDDYLISADL
RPFESGKPYRPDDYSNSKPDNDVPPSYGSHRPQEIPYEPIRPDHGFSRPQDTQYRPERPI
KNQSYNQKPSDELNFQGYGQPNRPEKPDYNYIIRPNRKPYQNSQDEGYGRPDRPSDIGHP
SGPIGPPSRPYRFDRPNRPRPDNAGQYASNFDHSSQNDNSIHVEIYDPPRPYRPIRGSYY
GHQGYGYLTQNSYAQNHGTITEIGGYSQNPPLDDNRPDPTTKPYGQYGYNGYRPQNSKPN
DPTWNQDYDKPVKGYTNQNSFTGQTGYGSNQSIKGNQYGSQNEYYQSQSDQSSYNSHNHH
IGYGDPGQNEPYKPSKPDRPNDYHQSQSDQSSYNSHNDHIGYGDPGQNQPYKPSKPDRPN
DYQSQSDQLSYNSQNHHIGYGDPGQNEPYKPSKPNRPNDYHQSQSDQPSYNTQNYHNGYG
DTGQNRPNKPLKPDRPNDYGPADYGQNSYQSQHSYSSSQSNYHSNQHVYESQVYGRPDQS
YSNRPNYKPSYNDYGSYGQTNGQNHDQGNHYGETNHGSYGSTQSSHGQQDFYNSNQNSYG
NTQNAYQDDRYKGSKGSYGGSQSSYHGVSQGISHDYHLSNGNKGSYDAYPPSQSGYGGQN
YGTQFDQGTKGSYSNQSSYGNKGSYGTNQDYSNSQNVYGTSLNDDSYTTPSYGSNQNAET
SHKGRPQRPNNKKPNDSPAYYKPNTESENPGYNVKPVYENEMDRPHAPGYTAGPGGEVVT
SRPVAVGDYGAGYREPGKEDSTKACFRRVLVGRRALRSHVRRVVSGQSLEDCKTECAVEH
RFPCESFNYRLDPSFRGKSLCELMTKPIEAFDLRRDFAEDKDYDFYESDRNSLEPYCPDS
LRGQGLLHSGYLTTQNRAEDRWGGGYVGSYGQRKHDDTNFIPYQIGIRRKNDPREHENWG
QYGGYYGGYDYYKDRNDYYKSQSHWNLNNAIDRAYSSEGVRPLTTIIRPHKSMADFDYNK
LAKDTPWNERYGSWKREKWNSSGSSFNSFDYGGYHHYGPTFELEGRSDENDPKDCSSRRS
AGMSLSSGSIRRSLYAKNVVECEASCFEEREFKCVSYSYRYSNSRGSDNCFLSERPYRGL
EMSADSSSDVYAMPQSHDCVNVNYDPWVESECFWHVRSGAAVTGAAVRAALTVAGLGACE
AECIRASGFFCRGFSFRFEAPITGEDLENCILTSSPPASLPPSRAAHHELYARGRAGRGC
QPALHDAHPEPGTQCYLQYDSAAQLSPSAVRGRARVRDEGACGVACTDAPFRCLSYSFKN
NAPPDRDNCFLSEIRLFDLQRGVDYVHSTDDWLFAFDLFNGQCWRKIHGPDYDEPTHELP
RPILTSGSEESFPVSGPSGPGYSESDPPYISEGHIKPFKPTIYKPIYPEPNGPDFEPHYE
TSGHFYKPTYSIEPSGPYKPGFAEPSGPDFKPHFEPVGPVLKPVYPLNEPPFESTRPGLK
PLYPVQPNFKPRPVEPSVYRPEYPVQKPGYVPKPAYRPPEHDRPFVPTSPPGYRPGRPGF
NPGSKPGFEGDREDGIAVSWRHYTVSGFPCRAGTSCAQNHVAGHWACEPEGGEIGSWDYC
CAPTHRCGYSEGFNKPWCYVGPESDQWRPCSEKYYPYHQHNVPHPSQANRDETSRPSGSS
HPHTNRPGPYLSEADRRYWDELYKNGPQAYYDRYGNPLPGYTRVPTSDPPHIKPEYSRPA
SGSWAPAQGGGTRDGLGVPRYWPVAYLHKGPPPNMTYFRYNETTTTEMPKPAESRDLPDD
RDSPDQQTLIDKPKIIDNHRGEKKRNISDHDEELHIDIDKTTTAKTVSEVTEIIERVNKS
ETESTTSDKDVDKMDLIDGIDDKLLDFSKSIEVFDIEDAKKSAKADLKTLRAEERQIEEI
GRLLASRRDGKVVLEKRSQKELASKNIAVDEDLLDFNFGNKFPVERRGVVRKVTKDEIER
DRNTDRSLEVSETTFVRPPRVLATTENIRKAIVNGKIFYDATIREQRDVLTNATRRSKSL
RPLEDRAPSVINSANFGKKKIIKTRNVNPVRRVRRVYRKRYNPEEVRRRLLERDRAKESS
VDSSRKI
NT seq
6684 nt
NT seq
+upstream
nt +downstream
nt
atgacaattatcaatttaaattcattcttgattaaaatgtcaattttaataattctgtgt
ccggttctgttggctggtgtccaaacgctgactattgattcacaattgggaacatccatt
gaagattgcttcatcaggctgtcgataggtgaacaattgccaagtaccgccatctatcga
aacgtcaccgaactaatgacgcgagaatgcgaacaaatttgcaaacaggataaacaatgc
caagcttacgattatggtgttggagctaaaggcaacgccacatgcaacctgagtaatata
gacgagaaagagatcaaagaaaaatcgatactgggccgccaccccgactacgacgtgtac
gtgcggaggttccaatgcgagcagtcgccgccttcaccgatgccgctgcacgacgaccca
ggtcctgacgaacagaagcgcccagataacccagaccggcccgaaggtccccttcaacgc
ccagtcttcagaccggacgacgaaattttcaacgatgattacctcatctccgctgacttg
aggcctttcgaatctggtaaaccgtacaggcctgatgattattccaattcgaaaccggat
aacgatgttcctccgagttacgggtcacacagaccgcaagaaataccatatgaacctatt
aggcctgatcacggtttcagtagacctcaagatacgcagtacagacccgaaagaccaatt
aaaaatcagtcatataaccaaaaaccatcggatgaactaaactttcaagggtatggacaa
cctaatagaccagaaaaaccggattataattacataattagaccgaacaggaagccttat
cagaactctcaagacgaaggttacggaaggccagataggccaagtgatattggacatcct
tcaggaccaatcggacctccaagtagaccgtataggttcgacagaccgaatcgtcctaga
ccggacaacgccggacaatatgcaagcaatttcgatcatagtagtcaaaatgacaactca
attcacgttgaaatatatgatccaccacgaccatacagacccatccgtggttcctattat
ggtcatcaaggatacggctatttaacccaaaatagctacgctcaaaatcatggaactatt
acggaaatcggtggctacagccaaaacccgccgcttgatgataatagacccgatccgact
actaaaccttacggccaatacggatataatggttatcgacctcaaaattccaaaccaaac
gacccaacctggaaccaggattacgataaacctgtcaaagggtacacaaatcaaaactca
tttacaggacaaaccggttatggttcaaaccaatccattaaaggtaatcaatacggcagt
caaaacgagtattatcaaagccagagtgatcagtcgtcatataatagccataatcatcat
attggttacggggaccccgggcaaaatgagccatacaaaccatcgaaaccggataggccg
aacgattatcatcaaagccagagtgatcagtcgtcatataatagccataatgatcatatt
ggttacggggaccccgggcaaaatcagccatacaaaccatcgaaaccggataggccgaac
gattatcaaagccagagtgatcagttgtcatataatagccaaaatcatcatattggttac
ggggaccccgggcaaaatgagccatacaaaccatcgaaaccgaatagaccgaacgattat
catcaaagccagagcgatcagccgtcatataacactcaaaattatcataacggttacgga
gataccgggcaaaatcgtccaaacaaacctttgaaaccggacagaccaaacgattatggc
ccagctgattatggacagaattcgtatcaaagccaacattcatacagttctagtcaaagc
aattatcacagcaaccaacatgtctacgaaagccaagtgtatggtaggccagatcaaagc
tatagcaatagaccaaactacaaaccttcttataacgactatgggtcttacgggcaaacg
aatggtcaaaatcatgatcagggcaatcactatggcgaaaccaaccatggctcatatggt
tctactcaaagctctcatggtcagcaagatttttataattccaatcaaaactcttatggg
aacacccaaaatgcatatcaggatgataggtataaaggtagcaaagggtcgtatgggggt
tcgcaaagctcataccacggagtttcccaaggtataagtcatgattatcatttatcaaat
ggaaacaaaggttcatatgatgcatatccccctagtcaaagtggttatggaggccaaaac
tatggtacccaatttgaccagggtactaagggcagctattcaaatcaaagctcgtatgga
aacaaagggtcttatggaacaaatcaggactatagcaatagtcagaatgtttatggaacc
agcctgaatgacgacagctacacgacaccgagctatggctcaaaccaaaacgcagagacc
agccacaaaggacggccccaaagacctaataacaaaaaacccaacgattcaccagcttat
tataaaccaaatacagagtcggagaaccctggatataacgtgaaaccggtttacgagaat
gaaatggatcggccccatgctcctggctatacagctgggccggggggtgaggtggtgact
tcgcgaccggtagctgtcggggattacggagccggatacagggaaccgggtaaagaagat
tccaccaaagcatgctttcgtcgtgtattggttggaaggagggcgcttcggagtcacgtc
aggagggtcgtgtctggacagtcgctggaggattgcaaaacggagtgcgctgtagaacac
aggttcccgtgcgagagttttaattacagattggacccctcgttccgaggcaaaagcctc
tgcgagctcatgacaaaaccgatagaagctttcgatctccgaagagacttcgctgaagac
aaagactatgatttttacgaaagcgaccggaatagtttggagccttattgccctgatagt
ctgcgcgggcaaggattgctgcattctggttatctgaccactcagaatcgggccgaagac
agatggggtggaggatacgtcggttcttatggacagagaaaacatgatgatacgaacttc
attccttatcagattggtataagaaggaagaacgatcccagagaacacgagaactgggga
caatatggaggctattatgggggctacgactattacaaggacagaaacgactactacaaa
tcgcagagccattggaacttaaacaacgcgatcgacagagcctacagctctgagggagtc
aggccattgactaccatcatcaggccccataaatcgatggcggatttcgactataacaaa
ctagcgaaggataccccgtggaacgaaagatacgggtcttggaaaagagagaaatggaac
agctcaggatcgtcatttaatagcttcgattacgggggctaccatcattacggacccacg
tttgagctggaaggcagaagcgacgaaaatgatccgaaagattgctcgtctcggagaagc
gccggtatgtctctgagtagtggttcgataaggaggtcgttgtacgccaagaatgtggtg
gaatgcgaggcatcgtgctttgaggagagggagtttaaatgcgtctcctacagctacaga
tactcaaattcgcgcggctccgacaactgctttttgagcgaaaggccgtacagaggcttg
gagatgtccgcggacagcagctccgatgtgtacgcgatgccacaaagccacgactgtgtc
aacgtaaattatgacccttgggttgaaagtgagtgcttctggcatgtgaggtctggagct
gcggtcaccggggccgcagtgagggccgccctcaccgtggccggtctgggagcgtgcgag
gcggagtgcattcgggcctccgggtttttctgcagaggttttagtttcaggttcgaggcc
ccgattacaggagaggacttagagaactgtatcctgacttcgtcccctcccgcctcgctg
cccccaagccgtgcggcccaccacgagctgtacgcgcgggggcgcgcggggcggggctgc
cagcccgcgctgcacgacgcccaccccgagcccgggacacaatgctacctccagtacgac
agcgcggctcagctatccccctcggccgtgcgggggcgcgcgagggtccgggacgagggg
gcgtgcggggtggcgtgcaccgacgcgcccttccggtgcctgagctactccttcaaaaat
aacgcaccaccggaccgcgataactgcttcctctccgagataagactgttcgatcttcaa
aggggagtggactacgtacattccactgacgactggctcttcgctttcgatctattcaac
gggcagtgctggaggaagatccacggaccggattatgatgagcctacacacgaacttccg
agaccgatcctgacatctggttctgaagagtccttcccagtgtcaggtccctctggtcct
ggttactctgaatcagatcctccttacatatctgaaggacacataaagccgtttaaacca
acaatatacaaaccgatatatcctgaaccaaacggtcccgatttcgaaccacattacgaa
actagtggacatttttataaaccaacgtattctattgaaccaagtggaccttacaaaccg
ggttttgctgaaccaagtggtccagatttcaaaccacatttcgaaccagttgggccggta
ctcaaaccggtataccctttaaacgaacctccatttgaatccaccaggcccggtcttaaa
cctctctatccggtgcagccaaatttcaaaccgcgtccggtcgaacctagtgtctataga
cccgagtatccggttcagaaaccaggatacgtgcccaaaccggcgtaccgacctccagaa
cacgatagaccctttgtccctaccagtccacccgggtaccgacctggacgacctgggttc
aatcctggctcaaaaccgggctttgaaggagacagggaagatggaattgccgtatcttgg
cgccactacacggtgtccgggttcccctgccgagcggggacttcctgcgcgcagaaccac
gtcgccggccactgggcttgcgaaccggagggtggagaaatcggatcgtgggattactgc
tgtgcgccaacgcatcgctgtgggtacagcgaaggtttcaataaaccctggtgctacgtg
ggcccagagagcgaccaatggcgcccgtgtagtgaaaaatactacccttaccatcaacac
aacgtgccgcatccctctcaagcaaacagagatgaaacctctcgaccttcgggttcgagc
catccacacacaaatagacctggtccgtacctatctgaagctgatagaagatactgggat
gaattatacaaaaacggtcctcaggcgtattacgatagatacgggaatcccttaccaggg
tatacaagagtaccgacatcagatccgccgcatataaaaccagaatattctcgacctgct
tccggatcctgggcgccagcacagggaggaggtacgcgtgatggactcggtgtgccgagg
tactggccggtggcctacctacacaaaggtcctccaccaaacatgacttattttagatac
aacgaaacgacaactactgaaatgccaaaacccgcggaatccagagacctaccagacgat
agggactcgccagatcaacagacacttatcgacaaaccaaaaatcatcgacaaccataga
ggcgagaagaaacgtaatattagcgatcatgacgaagaacttcatatcgacatcgacaaa
acgacaacagctaaaactgttagcgaagtcactgagattattgaaagagtaaataagagc
gagacagaaagcacaacttctgacaaggacgtagataaaatggatcttatcgatggaatt
gatgataaactattagatttctctaagtctattgaagtatttgatatagaagacgctaag
aagagtgcgaaggcagatcttaaaactctacgagcggaagagagacagatagaagaaata
ggacgactgttggcttcaaggcgcgacgggaaagttgtcttggaaaagcgatcgcagaaa
gaattggcctcaaagaatattgcggtcgacgaagatttgctggacttcaatttcgggaat
aaattcccagtagaaaggagaggagtcgtacggaaagtgacaaaagacgaaatagagagg
gacaggaataccgatagaagcctagaagtgagcgagacaacgttcgttagaccaccaaga
gtactagctacaactgaaaacatacgcaaagcaattgtcaacggtaaaatattttatgac
gccacaatcagagagcagagagatgtgctaacgaatgccactcgaagatccaaatctctg
aggcctctggaagacagagccccatcagtgattaattctgctaatttcggaaagaagaaa
attataaaaactagaaacgtaaatcctgtgaggagagtcagaagagtttacaggaaaaga
tataacccggaggaagttagaaggagactgttggagagagatagagctaaagagagttct
gttgatagcagtaggaaaatttaa
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integrated database retrieval system
