Bombyx mori (domestic silkworm): 778529
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Entry
778529 CDS
T02817
Symbol
Pabp
Name
(RefSeq) poly A binding protein
KO
K13126
polyadenylate-binding protein
Organism
bmor
Bombyx mori (domestic silkworm)
Pathway
bmor03015
mRNA surveillance pathway
bmor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bmor00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
778529 (Pabp)
09123 Folding, sorting and degradation
03018 RNA degradation
778529 (Pabp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bmor03019
]
778529 (Pabp)
03041 Spliceosome [BR:
bmor03041
]
778529 (Pabp)
Messenger RNA biogenesis [BR:
bmor03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
778529 (Pabp)
mRNA cycle factors
Stress granule specific factors
778529 (Pabp)
Spliceosome [BR:
bmor03041
]
Complex C
Other components
Complex C specific factors
778529 (Pabp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_DEAH11
RRM_7
RRM_Nup35
Nup35_RRM_2
RRM_occluded
RRM_RdRP1_2
RRM_3
RRM_PARP14_3
POP1_C
PABC_AtC3H46
Motif
Other DBs
NCBI-GeneID:
778529
NCBI-ProteinID:
NP_001091823
UniProt:
Q0N2S4
LinkDB
All DBs
Position
5:9620618..9625253
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AA seq
603 aa
AA seq
DB search
MASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERAL
DTMNFDIIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALFDTFSAFGNILSCK
VAQDETGASKGYGFVHFETEEAANKSIEKVNGMLLNGKMVYVGRFIPRKEREKELGEKAK
LFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERAC
IELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDD
ERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL
AQRKEDRKAHLTSQYMQRMASMRMQQMGQIFQPSGASGFFVPSLPPAPRYYGPAQMTQIR
PTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQSTIRTSLGARPITGQQGVAAAA
ASIRPPLVSQSSRPANYKYTPNMRNPPAPQPAVHIQGQEPLTSTMLAAAPLQEQKQMLGE
RLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHAESLKAKVDEAVAVLQAHQAKQQAT
KKE
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atggcatctctgtatgttggagatttacactctgatataaccgaggccatgttgtttgaa
aaattttcgactgctgggcccgtcctatctatacgtgtttgtcgcgatatgattacccgt
agatccttaggctacgcttatgttaattttcagcaacctacggatgctgaaagagcttta
gacaccatgaactttgatattatcaaaggaagacccattagaatcatgtggtcccaacgt
gatccttccctgcgcaaatccggagttgggaatgtttttataaaaaaccttgataaatct
attgacaacaaggctttatttgatacattctcagcgtttgggaatattttgagttgtaaa
gtagctcaagatgagactggtgcttcaaaagggtatggttttgttcattttgaaactgaa
gaagctgcaaataaatctattgaaaaggtaaatgggatgttgttaaatggtaaaatggtt
tatgtaggcagattcattccacgcaaagagcgcgaaaaggaacttggtgagaaggctaaa
ctgtttaccaatgtgtatgtaaagaactttggagaagacttttctgatgaaatgttaaaa
gatatgtttgagaaatatggtcgcattacaagtcacaaagttatgtacaaagatgatggc
aattctagaggctttggttttgttgcttttgaagacccagatgctgctgaaagagcttgc
attgaattgaatggcaaagagctagttgagggtaagcctctctatgttggacgtgcacaa
aagaaagctgaacgccaaaaggagttgaagcgtaagtttgaacaactgaaatctgaacgc
ctaactcgttatcaaggtgttaatttgtatgttaagaacttggatgatacaattgatgat
gaacgtctgcgcaaagaatttgcaccatttgggactattacgtctgcgaaggtaatgcta
gaagatggacgtagtaaaggcttcgggtttgtctgtttttcttctcctgaagaagctacc
aaagcagttactgagatgaatggacgtattgtaggaactaaaccattgtatgttgcacta
gctcaacgcaaggaggaccgtaaagcgcacttaacatctcagtacatgcagagaatggct
agtatgcgcatgcagcaaatgggccaaatattccagcctagtggtgcaagtggatttttt
gtaccatcgctccctccagcaccacgttactatggaccagctcaaatgactcaaataaga
cctacaactccaaggtggaatgcacagccccctgtaaggcctagcacacaagcagcatct
gcatatgcaaatatgcaacccacttacagaccagcaccgagagctccggcccaatctaca
ataagaacatcgttaggtgcaagacccataactggacagcaaggagttgctgctgctgct
gcatctattcgtccacctttagtatctcaaagcagtcgcccagccaattataaatataca
ccaaacatgcgcaacccaccagctccacaaccagcagtgcatatccaaggacaagaacct
ctgacctctactatgcttgcagcagcaccactccaggaacagaaacagatgcttggggaa
cgactgtttccacttattcagagaatgcaccctgatttggctgggaaaataactggtatg
cttttggaaattgataattcagaacttcttcatatgttagaacatgcagagtctctgaaa
gctaaagtagatgaagctgttgctgtactgcaggctcatcaagctaaacaacaagcaact
aaaaaagaataa
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