Brucella suis 1330: BRA0579
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Entry
BRA0579 CDS
T00096
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bms
Brucella suis 1330
Pathway
bms03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bms00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BRA0579 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bms03400
]
BRA0579 (mfd)
Enzymes [BR:
bms01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BRA0579 (mfd)
DNA repair and recombination proteins [BR:
bms03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BRA0579 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
RecG_dom3_C
AAA_22
NitrOD2
Motif
Other DBs
NCBI-ProteinID:
AAN33768
UniProt:
A0A0H3GAQ0
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All DBs
Position
II:complement(557774..561142)
Genome browser
AA seq
1122 aa
AA seq
DB search
MYIVRDGQRIADLEQVLGFVSPDLPVLHLPAWDCLPYDRVSPGADAAARRLAALSALCAL
KKAPHPAVILTTANAVLQKLPPQAALGEQVISARPGNQLDMNDLAARLERNGFERVSTVR
DIGEYAVRGGILDLYAPGAEEPLRLDFFGDTLETIRAFDPASQRTTGTRKEFVLQPMSEI
TLSSDMISRFRKNYVATFGAPQRDDALYQAISEGRRFAGMEHWLPLFYDNLETVFDHAGP
MPVVFDHLVHEALTERHTMVVDHYEARLRQAEGKEAGSDAVPYKPVKPEMLYLTPGQVEE
AAEAAGLRIDLTPFGAPEVSGRTIIHADVHKGRSFAEERAATDVNLFEAVVKHIADLRAS
GKKVLVAAWTEGSLDRLCQVLDEHGLEKIETVDRLSTVKALSRDKVTAAVLAVESGFDAG
DLVVVAEQDILGDRLIRRSRRRKRDQDFISEVASLTAGDIVVHVDHGIGRFIGLKTITAA
GAPHDCLEIHYAGDDRLFLPVENIELLSRYGLEGSDAVLDKLGGGAWQARKAKLKKRLLE
IAGHLIQIAAERQMRGAPVMTPPDGLYAEFAARFPYDETDDQLTAIEAVADDLAQGKPMD
RLICGDVGFGKTEVALRAAFIAAMSGVQVAVVVPTTLLSRQHFKTFSNRFHGLPINVAHA
SRLVGAKELAATKKGLEEGTVDIVVGTHALLGSSIKFKNLGLLIIDEEQHFGVKHKERLK
ELKSDVHVLTLSATPIPRTLQLALTGVRELSLITTPPVDRMAVRTFVSPFDPLVIRETLL
RERYRGGQSFYVVPRIADLTDIEEFLKEHVPELKVAVAHGQMAPGVLDDIMNAFYDGQYD
VLLSTTIVESGLDIPTANTMIVHRADMFGLAQLYQLRGRVGRSKQRAFALFTLPAGKMLT
QMAERRLKVLQSLDTLGAGFQLASHDMDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAV
ATLKGSGEVEDSQWSPQIAIGTAVMIPEAYVPDLQLRLGLYRRLADLEEPQDIDAFGAEL
IDRFGPMPDEVQHLLKIVYIKALCRRANVEKLDAGPKGVVIQFRHATFNNPVGLVKMIGE
QGSMAKIRPDQSIVFIRDWPTPEKRLNGSAVIMTQLAKIAAA
NT seq
3369 nt
NT seq
+upstream
nt +downstream
nt
atgtatatcgtgcgcgacgggcagcgcattgccgatctggagcaggtgttgggtttcgtt
tcgcccgatctgccggtgctgcacctgcccgcctgggattgcctgccttatgaccgcgtg
tcgccaggggcggatgctgcagcgcgcagacttgcggcgctcagcgcgctttgcgcactg
aagaaagcaccgcatccagccgtcattctcaccacggccaatgccgtgctgcaaaaattg
ccgccgcaggccgcacttggcgaacaggtgatctcagcgcgccccggcaaccagctcgac
atgaacgatcttgccgcacggctggagcgcaacggctttgagcgtgtctctaccgtgcgc
gacatcggcgaatatgcggtacgcggcggcattctcgatctttatgcgccgggagcggaa
gaaccgctgcggcttgattttttcggcgatacgctggaaacgatccgtgccttcgatccc
gcctcccagcgcaccaccggcacccgaaaggaattcgtgcttcagccgatgagcgaaatc
acgctctcgtccgacatgataagccggtttcgcaagaattatgtggccacgttcggcgcg
ccgcagcgtgacgatgcgctttatcaggccatcagcgaaggccgccgttttgctggcatg
gaacattggctgccgcttttctatgacaatctagagacagttttcgaccatgccgggcca
atgccggtcgtgttcgaccatctggtgcatgaggcgctgaccgagcgccacaccatggtt
gtggaccattacgaagcgcgactgcggcaggcggagggcaaagaggcgggcagcgatgcc
gtgccttacaagccggtaaagccggaaatgctctatcttacgccgggccaggttgaagaa
gccgccgaggccgctggcctgcgtattgaccttacgccattcggcgcgccggaggtttcc
ggccggaccattattcatgccgatgtgcacaagggccgcagctttgccgaggagcgcgcc
gcaaccgacgtgaacctgtttgaagccgtggtgaaacatattgcagacctgcgcgcctcc
ggcaaaaaggttctggttgccgcctggaccgaaggttcgctcgaccggctctgtcaggtt
ctggacgaacacgggcttgaaaaaatagagaccgtcgataggctttccaccgtcaaggcc
ctgtcgcgcgacaaggtgacggcggcggtgctggcggtcgaaagcggcttcgatgcgggc
gatctggtggtcgtggcggagcaggatattctgggcgacaggctcatccgccgctccagg
cgccgcaagcgcgatcaggatttcatctcggaagtcgcctcgctgacggctggcgatatc
gtcgtccatgtcgatcacggcattgggcgctttatcggcctcaagacgattactgcggca
ggcgccccgcatgactgccttgaaatccattatgcgggcgatgaccgcctgtttctgccg
gttgagaatatcgagcttctgtcgcgctatggcttggaagggtccgatgcggttctcgac
aagctgggcggtggcgcatggcaggcgcgcaaggcaaaactcaagaaacggcttctggaa
attgccggccatctgatccagattgccgccgaacgccagatgcgcggtgcgcctgtgatg
acgccgccggacggtctttatgcggaatttgccgcgcgctttccctatgatgagactgac
gaccagttgacggcaatcgaggccgtggcggatgatcttgcgcaaggcaagccgatggat
cgcctcatctgcggcgatgtcgggttcggcaagacggaagtggcgctgcgcgccgccttc
atcgccgcgatgagcggcgttcaggtggcagtggtcgtgccgaccacgcttctttcgcgc
cagcatttcaagaccttctccaaccgctttcacggcctgccgatcaatgtggcccacgcc
tcacgcctcgtcggcgcgaaggagctggccgccaccaaaaaggggctggaagagggaacg
gtcgatattgtcgtcggcacacacgcgcttttgggcagctccatcaagttcaagaatctc
ggccttctcattatcgatgaggagcagcatttcggtgtgaagcacaaggaacggctgaag
gaactgaaatccgacgtccatgtgctgaccctttcggccacgccgatcccgcgcaccctg
caacttgcgctgaccggcgtgcgcgaactttcgctcatcaccacgccgccggtggaccgc
atggcggtgcgcaccttcgtctcgccattcgatccgctcgtgatccgcgaaacccttttg
cgtgaacgctatcgcggcggccagagcttctatgtcgtcccacgcatagccgacctcacg
gatattgaagaattcctgaaggagcatgtgccggaactgaaagtggccgtggcccatggc
cagatggcgccgggtgtgctggatgacatcatgaatgccttctatgacgggcagtatgat
gtgcttctttccacaaccatcgtggaatcgggcctcgatattccaaccgccaacaccatg
atcgtgcatcgtgccgatatgttcgggctggcgcaactctatcagttgcgcggccgcgtg
ggccgctccaagcagcgcgctttcgcgctgttcacgctcccggcgggcaagatgctgacg
cagatggccgaacgccgtctgaaagtgctgcaatcgctcgacacgcttggcgcgggcttc
cagcttgcaagccacgacatggatattcgcggcgcaggcaatctgctgggcgaggaacag
tcgggccacatcaaggaagtgggcttcgagctttaccagcaaatgcttgaagaagcggtt
gcgacgctgaagggctccggcgaagtggaagacagccagtggtcgccgcagatcgccatt
ggtacggcggtcatgatcccggaagcctatgtgcccgacctgcaattgcgccttggcctt
tatcgccgtctggccgatctggaagagccgcaggatatcgatgcctttggtgcggaactc
atcgaccgtttcggcccgatgcccgacgaagtgcagcatcttctcaagatcgtctatatc
aaggcgctctgccgccgcgccaatgttgagaaactcgatgccgggccgaagggcgtggtt
atccagttccgccacgcgaccttcaacaatccggtcggtctggtaaaaatgatcggcgag
caggggtccatggcgaagatcaggccggaccagagcatcgtcttcatccgcgattggccg
acaccggaaaagcgcctcaacggctccgccgtcatcatgacacagcttgcaaagattgcg
gcggcctga
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