Burkholderia multivorans ATCC 17616 (JGI): Bmul_1327
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Entry
Bmul_1327 CDS
T00624
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bmu
Burkholderia multivorans ATCC 17616 (JGI)
Pathway
bmu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bmu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Bmul_1327
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bmu03400
]
Bmul_1327
Enzymes [BR:
bmu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Bmul_1327
DNA repair and recombination proteins [BR:
bmu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Bmul_1327
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
Glyco_tran_WecG
Cas3-like_C_2
SNF2-rel_dom
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ABX15015
LinkDB
All DBs
Position
1:complement(1457483..1460953)
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AA seq
1156 aa
AA seq
DB search
MPDNASTPFASPVARVKPGQRFAFDGTHGSADALAIARYLADNREHVPLLAVICANAVDA
QRLSQEIGYFAPDARVRLLPDWETLPYDTFSPHQDLVSERLATLHDLGEGRCDILLVPAT
TALYRMPPASFMAAYTFAFAQGERLDEAKLKSQLTLAGYEHVSQVVRPGEYCVRGSLIDL
FPMGSPLPYRIDLFDDQVDSIRAFDPDTQRSLYPVRDVRLLPGREFPFDEAARTAFRSRW
RETFEGDPSRAPIYKDIGNGVPSAGIEYYLPLFFDETATLFHYLPQDAHLVFAGDLDASI
RRFTADTKQRYAFLSHDRERPILEPQRLFLSDDDFFTLAKPFARLVLPAQPAGGWATALP
ELTVDRHADDPLAALRTFVETSGKRVLLTVESAGRRETILQLLAEHHLRPASNDHFAGWL
ESDARFALGVAPLANGFAVPGEGYAIVTETELYGALGRRAGRRRQEQASNVDAMVRDLSE
LKVGDPVVHAQHGIGRYMGLVSMDLGEGETEFLHLEYAGDSKLYVPVAQLHVISRYSGAD
PDSAPLHALGSGQWERAKRKAAQQIRDTAAELLNLYARRAAREGHAFALDPRDYVKFAES
FGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVALLS
PTTLLAEQHTQTFADRFADWPVRIVELSRFKTTKEVNAAIAQINEGSVDIVIGTHKLLSS
DVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSVI
ATAPQKRLAIKTFVRREEESVIREAMLRELKRGGQVYFLHNEVETIENRKAMLEELVPEA
RIVIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSANTIIMHRADKFGLAQL
HQLRGRVGRSHHQAYAYLLVHDPQALTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGTG
EVLGDKQSGEIHEIGFQLYTEMLNDAVKALKNGKEPDLTAPLAATTEINLHAPAILPADY
CADVQERLSLYKRLANCEHADAIDGIQEELIDRFGKLPPQAQALVETHRLRLAAKPLGIT
KIDASEAAIGLQFVPNPPIDPMRIIEMVQKHRHIKLAGQDKLRIETRSPDLAIRVSTIKE
TLRALGHRQDAASAAR
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atgccagacaacgcttccaccccgttcgcttcgcccgttgcccgcgtcaagcccggccag
cggttcgccttcgacggcacgcacggctccgccgatgcgctcgccatcgcccgctacctc
gccgacaaccgtgaacacgtgccgctgctcgccgtgatctgcgcgaacgcggtcgacgcg
cagcgtctttcgcaggaaatcggctacttcgcgccggacgcgcgcgtgcgcctgctgccg
gactgggaaacgctgccgtacgacacgttctcgccgcaccaggatctcgtgtccgagcgt
ctcgcgacgctgcacgatctcggcgaaggccgctgcgacatcctgctcgtgccggccacg
accgcgctgtaccggatgccgcccgcgtcgttcatggccgcctatacgttcgcgttcgcg
cagggcgagcgtctcgacgaagcgaagctgaaatcgcagctcacgctcgccgggtacgag
cacgtgagccaggtcgtgcggcccggcgaatactgcgtgcgcggctcgctgatcgacctg
ttcccgatgggctcgccactgccgtaccggatcgacctgttcgacgatcaggtcgactcg
atccgcgcgttcgatcccgacacgcagcgcagcctctacccggtgcgcgacgtgcggctg
ctgccgggccgcgaattcccgttcgacgaagccgcgcgcaccgcgtttcgcagccgctgg
cgcgagacgttcgaaggcgacccgagccgcgcgccgatctacaaggacatcggcaacggc
gtgccgtcggccggcatcgagtattacctgccgctgttcttcgacgaaaccgcgacgctg
ttccactatctgccgcaggacgcgcatctcgtgtttgccggcgatctcgacgcgtcgatc
cgccgcttcacggccgataccaagcagcgctatgcgttcctgtcgcacgaccgcgagcgg
ccgatcctcgagcctcagcggctgttcctgtcggacgacgatttcttcacgctcgccaag
ccgttcgcgcgtctcgtgctgcccgcgcagccggccggcggctgggcgactgcgctgccc
gagctgaccgtcgaccgtcatgcggacgatccgctcgccgcgctgcgtaccttcgtcgag
acttccggcaagcgcgtgctgctgaccgtcgagtcggccggccgccgcgagacgatcctg
cagctgctcgccgagcatcatctgcgccccgcgtcgaacgatcatttcgccggctggctc
gaaagcgacgcgcgcttcgcgctcggcgtcgcgcccctcgcgaacggcttcgcggtgccg
ggcgaaggctatgcgatcgtcaccgagaccgagctgtacggtgcgctcggccgtcgcgcg
ggccgccgccggcaggaacaggcgagcaacgtcgacgcgatggtgcgcgacctgtccgag
ctgaaggtcggcgacccggtcgtccatgcgcagcacggcatcggccgctacatgggcctc
gtgtcgatggatctcggcgaaggcgaaaccgaattcctgcatctcgaatacgcgggcgac
agcaagctgtacgtgcccgtcgcgcagctgcacgtgatctcgcgctacagcggcgccgat
cctgacagcgcgccgctgcatgcgctcggctccggccagtgggagcgcgcgaagcgcaag
gccgcgcagcagatccgcgatacggcggccgagctgctgaacctctacgcgcgacgcgcg
gcgcgcgaaggccatgcgttcgcgctcgatccgcgcgactacgtgaagttcgcggaaagc
ttcggcttcgaggagacgcccgatcaggccgcggcgatcgcggccgtgatcggcgacatg
acgagcggcaagccgatggaccgcctcgtgtgcggcgacgtcggcttcggcaagaccgag
gtcgcgctgcgtgcggcgttcatcgcggtgatgggcggcaagcaggtcgcgctgctgtcg
ccgaccacgctgctcgccgagcagcatacgcagaccttcgccgatcgcttcgcggactgg
ccggtgcgcatcgtcgagctgtcgcgcttcaagacgaccaaggaagtgaacgcggcaatc
gcgcagatcaacgaaggcagcgtcgacatcgtgatcggcacgcacaagctgctctcctcg
gacgtgcagttcaagcggctcggcctcgtgatcatcgacgaggagcaccgcttcggcgtg
cgtcagaaggaggcgctgaaggcgttgcgcgcggaagtcgacgtgctgacgctgacggcc
acgccgattccgcgcacgctcgggatggcgctcgaagggctgcgcgatttctcggtgatc
gcgaccgcgccgcagaagcggctcgcgatcaagaccttcgttcgccgcgaggaagaaagc
gtgatccgcgaggcgatgctgcgcgagctgaagcgcggcggccaggtgtacttcctgcac
aacgaggtcgagacgatcgagaaccgcaaggcgatgctcgaggaactcgtaccggaggcg
cgcatcgtgatcgcgcacggccagatgcacgagcgcgagctcgagcgcgtgatgcgcgat
ttcgtcgcgcagcgcgcgaacgtgctgctctgtacgacgatcatcgagaccggcatcgac
gtgccgagtgcgaacacgatcatcatgcaccgcgcggacaagttcggtctcgcgcagctg
caccagttgcgcgggcgcgtcggccgctcgcatcaccaggcgtatgcgtacctgctcgtc
cacgatccgcaggcgctcaccaagcaggcgcagcgccggctcgaggcgatccagcagatg
gaggaactcggttcgggcttctatctggcgatgcacgatctcgagatccgcggcaccggc
gaggtgctcggcgacaagcagtcgggcgagatccacgagatcggcttccagctctatacg
gagatgctcaacgatgcggtgaaggcgctgaagaacggcaaggagcccgacctcaccgcg
ccgctcgcggcgacgaccgagatcaacctgcatgcgcccgcgattctgccggccgactac
tgcgcggacgtgcaggagcggctgtcgctctacaagcggctcgcgaactgcgagcacgcc
gatgcgatcgacggcatccaggaggagctgatcgaccgcttcggcaagctgccgccgcag
gcgcaggcgctcgtcgaaacgcatcggctgcggctcgccgcgaaaccgctcggcatcacg
aagatcgacgcgagcgaagccgcgatcgggctgcagttcgtgccgaatccgccgatcgat
ccgatgcggatcatcgagatggtgcagaagcatcggcacatcaagctcgccggccaggac
aagctgcgcatcgaaacgcgctcgcccgatctcgcgatccgcgtgtcgacgatcaaggaa
acgctgcgcgcgctcgggcatcggcaggacgcggcaagcgccgcacgctga
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integrated database retrieval system
