Burkholderia multivorans ATCC BAA-247: NP80_1213
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Entry
NP80_1213 CDS
T03881
Name
(GenBank) ribonuclease, Rne/Rng family domain protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bmul
Burkholderia multivorans ATCC BAA-247
Pathway
bmul03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bmul00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NP80_1213
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bmul03019
]
NP80_1213
03009 Ribosome biogenesis [BR:
bmul03009
]
NP80_1213
Enzymes [BR:
bmul01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
NP80_1213
Messenger RNA biogenesis [BR:
bmul03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NP80_1213
Ribosome biogenesis [BR:
bmul03009
]
Prokaryotic type
rRNA processing factors
NP80_1213
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AJY19905
LinkDB
All DBs
Position
1:complement(1274043..1277204)
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AA seq
1053 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNY
GEDRHGFLPFKEVARQYFKDGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGDERQELRETMAQLQIPDGMSMIARTAGIGRSAEELQ
WDLNYLLQLWRAIEAASQSGNPGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIYDQ
ARAFMDIVMPDNVSKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALV
AIDVNSARATKGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVE
QRLKDALKHDRARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSA
LQVLRIIQEEAMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGIVLIPNKHLDT
PHYKLERLRHDDARLDDPRASWKMAEEAARELESETGYSKRAADVKPKQEAAVKGITPER
PAPSAAPQRPVEPTAAPAPAPVAQPSGGFIGWLKGLFGMSAAPAPAPVAPAPAKEQAARP
ARERTEKTEQRGERGGDRNRNRRGGNGQQAPGGRDQAAAGRGQPQRQEREGKEAREPREG
REGREGRENREAREGREGREGRAPREAREPRENREPREAREPRERAEQPEAVESARGERQ
ERGERRERGERRKPQHAATLETVNRGESHPEQDADKAAAAALPGADVAADAEAGARDGEE
RRRRRRGRRGGRRERDEEGAVVDQAEAGLDGEAAAQPAAHEAPAAAEPAHANAPATVAAA
AAAGVIVAETVVEQRAESVAVDTPSAPAHADSDSVAVAEPVVAAAPAAAPAPVVAPAADV
EAGPVALAVSPTDAFEVPAGVEAPVAVDVQPADTAVVAEAAPAVAAPAVSAAPAVAPAPV
EAAPVEPVAAPAPAPAAASAPAVAQPSAAPASASLEAVLQQAGLVWVNTDAEKLRAAQEA
ASRLPRPVRTPRERKPLPPVDTTPMQQVETTHR
NT seq
3162 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgctgttcaatgcgacgcagcaggaggagctgcgcgtcgccatcgtcgat
gggcaaaagctcatcgacatcgacatcgagacagccgggcgcgaacagcgcaaaggcaat
atctacaagggtgtcgtcacgcgcatcgagccgtcgctcgaagcgtgcttcgtcaactac
ggcgaagaccgtcacggcttcctgccgttcaaggaagtcgcccgccagtacttcaaggac
ggcgtcgacatgcgctcggcgcgcatccaggacgcgctgcgcgaaggccaggaactgatc
gttcaggtcgaaaaggaagagcgcggcaacaagggcgccgccctcaccacgttcatctcg
ctcgccggccgctacctcgtgctgatgccgaacaacccgcgcggcggcggcgtgtcgcgc
cggatcgagggcgacgagcgtcaggaactgcgcgaaacgatggcgcagctgcagattccg
gacggcatgagcatgatcgcccgcaccgcggggatcggccgcagcgccgaggaactgcag
tgggacctgaactacctgctgcagctctggcgcgcgatcgaagccgcatcgcaaagcggc
aatcccggccagccgatgctgatctatctggaatcgagcctcgtgatccgcgcgatccgg
gactatttccagcccgacatcggcgaaatcctgatcgacacgaccgagatctacgatcag
gcccgcgcattcatggacatcgtgatgccggacaacgtgtcgaaggtgaagcgctaccac
gacgacgtgccgctgttctcgcgcttccagatcgagcaccagatcgaaacggcctactcg
cgcacggtgccgctgccgtcgggcggcgcgatcgtgatcgaccacaccgaagcgctcgtc
gcgatcgacgtgaactcggcgcgcgccaccaagggcgccgacatcgaggaaacggcgacc
cgcacgaacctcgaagcggccgacgaagtcgcccgccagctgcgcctgcgcgacctcggc
ggcctgatcgtgatcgacttcatcgacatggagtcggcgaagagccagcgcgaagtcgag
cagcgcctgaaggacgcgctcaagcatgaccgcgcgcgcgtccagatgggcaagatctcg
cgcttcggcctgatggagctgtcgcgccagcgtctgcgtccggcgctgtcggaaggcagc
cacgtgacctgcccgcgctgcaacggcacgggccacatccgcgacaccgaatcgtccgcg
ctgcaagtgctgcggatcattcaggaagaagcgatgaaggaaaacaccgcggcgatccac
tgccaggtgccggtcgaagtgaccgccttcctgctcaacgaaaagcgtcaggaaatcaac
aagatcgagtcgcgcttcaaggtcggcatcgtgctgatcccgaacaagcacctcgacacg
ccgcactacaagctcgaacgcctgcgtcacgatgacgcacgcctcgacgatccgcgtgcc
tcgtggaagatggccgaggaagcggcgcgcgaactggagtcggaaaccggctacagcaag
cgcgcggccgacgtgaagccgaagcaggaagcggcggtcaagggcatcacgcccgagcgt
ccggcaccgagcgcggccccgcagcgtccggtcgagccgacagcggcaccggcccccgcg
ccggtcgcgcagccgagcggcggcttcatcggctggctgaagggcctgttcggcatgtcg
gccgctccggcgcccgcgccggtcgcaccggcaccggcgaaggaacaggcggcccgtccg
gcccgcgaacgcaccgagaagaccgagcagcgcggcgaacgcggcggcgatcgcaaccgc
aatcgtcgcggcggcaacgggcagcaggcgccaggcggtcgcgaccaggcggccgcaggc
cgcggccagccgcaacgtcaggaacgcgaaggcaaggaagcgcgcgagccgcgtgaaggt
cgcgagggtcgtgaaggtcgcgagaaccgcgaagctcgcgaaggccgtgagggtcgcgaa
ggccgcgcaccgcgcgaagcacgcgaaccgcgcgagaaccgcgagccgcgtgaagcccgt
gaaccgcgcgagcgcgccgagcagccggaggccgtcgagtccgcccgcggcgagcgccag
gaacgcggcgagcgtcgcgagcgcggcgaacgccgcaaaccgcagcatgcggcgacgctg
gaaaccgtgaaccgcggcgaaagccatccggaacaggacgccgacaaggcggccgccgcc
gccctgccgggcgcggacgtcgcagcggatgccgaagccggcgcgcgtgacggcgaagag
cgccgccgccgccgccgcggccgtcgcggcggtcgtcgcgagcgtgacgaggaaggcgca
gtggtcgatcaggccgaagcgggcctcgacggcgaagccgccgcgcagccggcggcgcac
gaagcgccggcggccgccgagccggcccacgcgaacgcgccggctaccgtcgcggcagcc
gctgcggccggtgtgatcgtcgccgagacggtcgtcgaacagcgtgccgaatcggtcgcg
gtcgatacgccgtcggctccggcacatgccgacagtgactccgtcgccgtcgccgaaccg
gtcgtcgccgccgcacccgctgcggcaccggccccggtcgtcgcaccggccgccgacgtc
gaagcgggccccgttgcgctcgccgtttcgccgaccgacgcgttcgaagtgccggccggc
gtggaagcgccggttgccgtcgacgtgcagccggccgacacggcagtcgttgccgaggca
gcgccggccgtggcggcaccggcagtatcggccgcaccggctgtcgcaccggcgccggtc
gaagcagcaccggtcgaaccggtcgcggctccggctcctgcaccggctgccgcttcggca
cccgccgtcgcccagccttccgccgcgcccgcttcggcgagcctggaagccgtgctgcag
caggcgggcctcgtgtgggtgaataccgacgcggagaagctgcgtgcggcgcaggaagcc
gcatcgcgtctgccgcgcccggtgcgcacgccgcgcgagcgcaagccgctgccgccggtc
gacacgacgccgatgcagcaggtcgagacgacgcaccgctaa
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