Burkholderia multivorans ATCC BAA-247: NP80_2009
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Entry
NP80_2009 CDS
T03881
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bmul
Burkholderia multivorans ATCC BAA-247
Pathway
bmul03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bmul00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NP80_2009 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bmul03400
]
NP80_2009 (mfd)
Enzymes [BR:
bmul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NP80_2009 (mfd)
DNA repair and recombination proteins [BR:
bmul03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NP80_2009 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
Glyco_tran_WecG
Cas3-like_C_2
SNF2-rel_dom
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AJY19969
LinkDB
All DBs
Position
1:2159846..2163316
Genome browser
AA seq
1156 aa
AA seq
DB search
MPDNASTPFASPVARVKPGQRFAFDGTHGSADALAIARYLADNREHVPLLAVICANAVDA
QRLSQEIGYFSPDARVRLLPDWETLPYDTFSPHQDLVSERLATLHDLGEGRCDILLVPAT
TALYRMPPASFMAAYTFAFAQGERLDEAKLKSQLTLAGYEHVSQVVRPGEYCVRGSLIDL
FPMGSPLPYRIDLFDDQVDSIRAFDPDTQRSLYPVRDVRLLPGREFPFDEAARTAFRSRW
RETFEGDPSRAPIYKDIGNGVPSAGIEYYLPLFFDETATLFHYLPQNAHLVFAGDLDAAI
RRFTADTRQRYAFLSHDRERPILEPQRLFLSDDDFFTLAKPFARLVLPAQPAGGWATALP
ELTVDRHADDPLAALRTFVETSGKRVLLTVESAGRRETILQLLAEHRLRPASNDHFAGWL
ESDARFALGVAPLANGFAVPGEGYAIVTETELYGALGRRAGRRRQEQASNVDAMVRDLSE
LKVGDPVVHAQHGIGRYMGLVSMDLGEGETEFLHLEYAGESKLYVPVAQLHVISRYSGAD
PDSAPLHALGSGQWERAKRKAAQQIRDTAAELLNLYARRAAREGHAFALDPRDYVKFAES
FGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVALLS
PTTLLAEQHTQTFADRFADWPVRIVELSRFKTTKEVNAAIAQINEGSVDIVIGTHKLLSS
DVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSVI
ATAPQKRLAIKTFVRREEESVIREAMLRELKRGGQVYFLHNEVETIENRKAMLEELVPEA
RIVIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSANTIIMHRADKFGLAQL
HQLRGRVGRSHHQAYAYLLVHDPQALTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGTG
EVLGDKQSGEIHEIGFQLYTEMLNDAVKALKNGKEPDLTAPLAATTEINLHAPAILPADY
CADVQERLSLYKRLANCEHADAIDGIQEELIDRFGKLPPQAQALVETHRLRLAAKPLGIV
KIDASEAAIGLQFVPNPPIDPMRIIEMVQKHRHIKLAGQDKLRIETRSPDLAIRVSTIKE
TLRALGHRQDAASAAR
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atgccagacaacgcttccaccccgttcgcttcgcccgttgcccgcgtcaagcccggccag
cggttcgccttcgacggcacgcacggctccgccgatgcgctcgccatcgcccgctacctc
gccgacaaccgtgaacacgtgccgctgctcgccgtgatctgcgcgaacgcggtcgacgcg
cagcgtctttcgcaggaaatcggctatttctcaccggacgcgcgcgtgcgcttgctgccg
gactgggaaacgctgccgtacgacacgttctcgccgcaccaggatctcgtgtcggagcgt
ctcgcgacgctgcacgatctcggcgaaggccgctgcgacatcctgctcgtgccggccacg
accgcgctgtaccggatgccgcccgcgtcgttcatggccgcctatacgttcgcgttcgcg
cagggcgagcgtctcgacgaagcgaagctgaaatcgcagctcacgctcgccggctacgaa
cacgtgagccaggtcgtgcggcccggcgaatactgcgtgcgcggctcgctgatcgacctg
ttcccgatgggctcgccgctgccgtaccggatcgacctgttcgacgatcaggtcgactcg
atccgcgcgttcgatcccgacacgcagcgcagtctctacccggtgcgcgacgtgcggctg
ctgccgggccgcgaattcccgttcgacgaagccgcgcgcaccgcgtttcgcagccgctgg
cgcgagacgttcgaaggcgacccgagccgcgcgccgatctacaaggacatcggcaacggc
gtgccgtcggccggcatcgagtattacctgccgctgttcttcgacgaaaccgcgacactg
ttccactatctgccgcagaacgcgcatctcgtgtttgccggcgatctcgacgcggcgatc
cgccgcttcacggccgataccaggcagcgctatgcgttcctgtcgcacgaccgcgagcgg
ccgattctcgagccgcagcggctgttcctgtcggacgacgatttcttcacgctcgccaag
ccgttcgcgcgtctcgtgctgcccgcgcagccggccggcggctgggcgaccgcgctgccc
gaactgaccgtcgaccgtcatgccgacgatccgctcgccgcgctgcgtaccttcgtcgag
acttccggcaaacgcgtgctgctgaccgtcgagtcggcaggccgccgcgagacgatcctg
cagctgctcgccgaacatcgtctgcgccccgcgtcgaacgatcatttcgccggctggctc
gagagcgacgcgcgcttcgcgctcggcgtcgcgccgctcgcgaacggcttcgcggtgccg
ggcgaaggctatgcgatcgtcaccgagaccgagctgtacggcgcgctcggccgtcgcgcg
ggccgccgccggcaggaacaggcgagcaacgtcgacgcgatggtgcgcgacctgtccgag
ctgaaggtcggcgacccggtcgtccatgcgcagcacgggatcggccgctacatgggcctc
gtgtcgatggatctcggcgaaggcgaaaccgaattcctgcatctcgaatacgcgggcgaa
agcaagctgtacgtgcccgtcgcgcaactgcacgtgatctcgcgctacagcggcgccgat
cccgacagcgcgccgctgcatgcgctcggctccggccagtgggagcgcgcgaagcgcaag
gctgcgcagcagatccgcgatacggcggccgaactgctgaacctctacgcgcgccgcgcg
gcgcgcgaaggccatgcgttcgcgcttgatccgcgcgactacgtgaagttcgcggaaagc
ttcggcttcgaggagacgcccgaccaggccgcggcgatcgcggccgtgatcggcgacatg
acgagcggcaagccgatggaccgcctcgtgtgcggcgacgtcggcttcggcaagaccgaa
gtcgcgctgcgtgcggcgttcatcgcggtgatgggcggcaagcaggtcgcgctgctgtcg
ccgaccacgctgctcgccgagcagcatacgcagaccttcgccgatcgcttcgcggactgg
ccggtgcgcatcgtcgagctgtcgcgcttcaagacgaccaaggaagtgaacgcggcgatc
gcgcagatcaacgaaggcagcgtcgacatcgtgatcggcacgcacaagctgctgtcgtcg
gacgtgcagttcaagcggctcggcctcgtgatcatcgacgaggaacaccgcttcggcgtg
cgccagaaggaagcgctgaaggcgctgcgcgcggaagtggacgtgctgacgctgaccgcc
acgccgattccgcgcacgctcgggatggcgctcgaagggctgcgcgatttctcggtgatc
gcgaccgcgccgcagaagcggctcgcgatcaagaccttcgttcgccgcgaggaagaaagc
gtgatccgcgaggcgatgctgcgcgagctcaagcgcggcggccaggtgtacttcctgcac
aacgaggtcgagacgatcgagaaccgcaaggcgatgctcgaggaactcgtgcccgaggcg
cgcatcgtgatcgcgcacggccagatgcacgagcgcgagctcgagcgcgtgatgcgcgat
ttcgtcgcgcagcgtgcgaacgtgctgctgtgtacgacgatcatcgaaaccggcatcgac
gtgccgagcgcgaacacgatcatcatgcaccgcgcggacaagttcggtctcgcgcagctg
caccagctgcgcggccgcgtcggccgctcgcaccaccaggcgtatgcgtacctgctcgtc
cacgatccgcaggcgctcaccaaacaggcgcagcgccggctcgaggcgatccagcagatg
gaggaactcggttcgggcttctatctggcgatgcacgatctcgagatccgcggcaccggc
gaggtgcttggcgacaagcagtcgggcgagatccacgagatcggcttccagctctatacg
gagatgctcaacgatgcggtgaaggcgctgaagaacggcaaggagcccgacctcaccgcg
ccgctcgccgcgacgaccgagatcaacctgcatgcgcccgcgatcctgccggccgactac
tgcgcggacgtgcaggagcggctgtcgctctacaagcggctcgcgaactgcgagcacgcc
gatgcgatcgacggcattcaggaagagctgatcgaccgcttcggcaagctgccgccgcag
gcgcaggcgctcgtcgaaacgcatcggctgcggctcgccgcgaaaccgctcggcatcgtg
aagatcgacgcgagcgaagccgcgatcgggctgcagttcgtgccgaatccgccgatcgat
ccgatgcggatcatcgagatggtgcagaagcatcggcacatcaagctcgcgggccaggac
aagctgcgcatcgaaacgcgctcgcccgatctcgcgatccgcgtgtcgacgatcaaggag
acgctgcgcgcgctcgggcatcggcaggacgcggcaagcgccgcacgttga
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integrated database retrieval system
