Burkholderia multivorans ATCC BAA-247: NP80_2274
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Entry
NP80_2274 CDS
T03881
Symbol
hrpA
Name
(GenBank) RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
bmul
Burkholderia multivorans ATCC BAA-247
Brite
KEGG Orthology (KO) [BR:
bmul00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bmul03019
]
NP80_2274 (hrpA)
Enzymes [BR:
bmul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
NP80_2274 (hrpA)
Messenger RNA biogenesis [BR:
bmul03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
NP80_2274 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
T2SSE
NACHT
nSTAND3
AAA_19
Motif
Other DBs
NCBI-ProteinID:
AJY19858
LinkDB
All DBs
Position
1:complement(2433543..2437679)
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AA seq
1378 aa
AA seq
DB search
MSNVPKSPAATRAKAPSARHPDGAADARGQQGQPPRRQQDEQAGKPPRAAQPQDARAPRR
ERPPRAAVAPNPVPPITYPESLPVSGRRDEIARAIAAHQVVIVSGETGSGKTTQLPKICL
ELGRGLGAGGTGLIGHTQPRRLAASSTGRRIAEELGTPFGEVVGYKVRFTDNLAPGASVK
LMTDGILLAETQADPLLKAYDTLIIDEAHERSLNIDFLLGYLKEILPKRPDLKLIVTSAT
IDADRFARHFGSDAHPAPVIEVSGRLYPVEVRYRPVAEDRPAVKHAEGTASRDRAKTARE
AERDLMDAIVDAVDELCREGPGDVLVFLPGEREIREAAEALRKHHPPHTEILPLFARLSA
ADQDKVFKPSNARRIVLATNVAETSLTVPGIRYVVDTGLARVKRYSYRNKVEQLQVEPIS
QAAANQRAGRCGRVADGICIRLYDESDFQARARFTDPEILRSSLASVILRMKSLHLTAIE
SFPFLEPPPGRAIADGYQLLNELGAVDDDNALTPLGRELARLPLDPRVGRMILAARDQQS
LREVLIIASALSVQDPRDRPIDAQEQADQAHRRFADERSEFLQWLKIWSWFEEAVAHKKS
NRQLVDACRQNFLSHLRLREWRDVHSQLLTVVREHGWRLNESEATYEQVHLALLTGLLGN
LGLKADDDPHYLGARGIKFYLWPGSALAKKAGRWVMAAELVETSRLYARCLAKIEPEWVE
KVGAHLLKKSLSEPHWEKRPAQVSAFERATLYGLPIYHRRRVAFGRQDPARARELFIRGA
LVDGEFDTKLPFFAHNRKLLADIEQLEHKSRRQDVLVDDELIYAFYDHAIPAGIHTGAAF
ERWYRDEVKKSGQPDDKLRLLYLSRDDLMRHEAAGVTTELFPKRATMAGVEMALTYHFEP
GSPRDGVTLAVPLYALNQVDARRCEWLVPGMLKEKVQLLLKSLPQKLRRHCVPLPDYAAG
FVERTGRERFGAGGLVEALIADVREQTQVAMKAADFKLETLPAHLFMNFKVIDEHGRQLA
MGRNLAQLRQELGAQAQQQFQKIAAASTLAVGADADGGTAPAASGEPAGKDGRGAKGGKT
VAPQTLAAPEPGATALYENLTTWNFGKLPELLEIRRRGQTLYGYPALVDRGTHCDVEVFD
SPEEAARIHRAGLRRLFALQLKEPIKYLEKNLPGLREMAMQYMSLGTQDELRDQLIDTAL
DRACLQDPLPDDDASFHARRDEGRSRLNLLAQEIARLVGQILTEYAGVVKKLAQAKPFAQ
AHADLQQQLSALIGKRFVIDTPYAQLVHFPRYLKGIALRIDKLKADPARDAKQLGELQPL
VQQYQRAVSQRGGVVDPRLAEFRWLLEELRISLFAQELRTPMPVSVKRLYKVWESMQR
NT seq
4137 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaatgtacctaaaagtcccgcggcgacgcgggcaaaagcgccgtcggcccggcac
ccggatggtgcggccgacgcgcgcgggcagcagggccagccgccgcgccggcagcaggac
gagcaggccggcaagccgccgcgcgccgcgcaaccgcaggacgcgcgcgcaccgcgccgc
gaacggccgccgcgcgcggcggtcgcaccgaatcccgttccgccgatcacctacccggaa
agcctgcccgtatcgggccggcgcgacgagattgcgcgcgcgatcgccgcgcatcaggtc
gtgatcgtcagcggcgaaacgggctcgggcaagaccacgcagctgccgaagatctgcctg
gaactgggccgcgggctcggcgcgggcggcaccggactgatcggccatacgcagccgcgc
cggctcgcggcatcgtcgaccggccgccggatcgccgaggaactcggcacgccgttcgga
gaagtggtcggctacaaggtgcgcttcaccgacaatctcgcgccgggcgcgtccgtgaag
ctgatgacggacggcatcctgctcgccgagacgcaggccgatccgctgctgaaggcgtac
gacacgctgatcatcgacgaggcgcacgaacgcagcctgaacatcgatttcctgctcggc
tatctgaaggagatcctgccgaagcggccggacctgaaactgatcgtcacgtccgcgacg
atcgacgccgatcgcttcgcgcgccatttcggcagcgacgcgcacccggcgcccgtgatc
gaggtcagcgggcggctgtatccggtcgaggtgcgctaccgcccggtggccgaggatcgg
ccggccgtcaagcatgcggaaggcaccgcgagccgggaccgtgcgaagaccgcgcgcgag
gccgagcgcgacctgatggacgcgatcgtcgacgcggtcgacgagctgtgccgcgaaggc
cccggcgacgtgctcgtgttcctgcccggcgagcgcgagatccgcgaggcggccgaggcg
ctgcgcaagcatcatccgccgcataccgagatcctgccgctattcgcgcggctgtcggcg
gccgatcaggacaaggtcttcaagccgtcgaacgcgcgccggatcgtgctcgcgacgaac
gtcgcggagacctcgctgacggtgcccggcatccgctacgtcgtcgacacgggcctcgcg
cgcgtgaagcgctattcgtaccggaacaaggtcgagcagctgcaggtcgagccgatctcg
caggcggccgcgaaccagcgcgcgggccgctgcggccgcgtcgcggacggcatctgcatc
cgcctgtacgacgaaagcgacttccaggcgcgcgcgcgctttaccgatccggagatcctg
cgctcgtcgctcgcctcggtgatcctgcggatgaagtcgctgcatctgacggcgatcgag
tcgttcccgttcctcgagccgccgcccgggcgcgcgatcgcggacggctatcagctactg
aacgaactcggcgcggtcgacgacgacaacgcgctgacgccgctcggccgcgaactcgca
cggctgccgctcgatccgcgcgtcggccggatgatcctggccgcacgcgaccagcagtcg
ctgcgcgaggtgctgatcatcgcgagcgcgctgtccgtgcaggacccgcgcgaccgcccg
atcgacgcgcaggagcaggccgaccaggcgcatcgacgctttgccgacgagcgctcggaa
ttcctgcagtggctgaagatctggtcgtggttcgaggaagcggtcgcgcacaagaagtcg
aaccggcaactcgtcgacgcatgccggcagaacttcctgtcgcatctgcggctgcgcgaa
tggcgcgacgtgcactcgcagctgctgacggtcgtgcgcgaacacggctggcggctcaac
gaatcggaggcgacgtacgagcaggtgcatctggccctgttgacgggcctgctcggcaac
ctcggcctcaaggccgacgacgatccgcactatctcggtgcgcgcgggatcaagttctac
ctgtggccgggttccgcgctcgcgaagaaggccggccgctgggtgatggcggcggaactc
gtcgagacgagccggctgtacgcgcgctgcctcgcgaagatcgagcccgaatgggtcgag
aaggtcggcgcgcatctgctgaagaaatcgctgtcggagccgcactgggagaagcggccg
gcgcaggtcagcgcgttcgagcgcgcgacgctctacgggctgccgatctaccatcggcga
cgcgtcgcgttcggcaggcaggacccggcacgcgcgcgcgagctgttcattcgcggcgcg
ctcgtcgacggcgagttcgacacgaagctgccgttcttcgcgcacaaccgcaagctgctc
gccgacatcgagcagctcgagcacaagtcgcgccgacaggacgtgctggtcgacgacgag
ctgatctatgcgttctacgaccacgcgattccggcgggcattcatacgggcgccgcgttc
gagcgctggtatcgcgacgaagtgaaaaagagcggccagccggacgacaagctgcgcctg
ctgtacctgtcgcgcgacgacctgatgcgtcacgaggcggccggcgtgacgaccgagctg
ttcccgaagcgcgcgacgatggcgggcgtcgagatggcgctgacctaccatttcgagccg
ggctcgccgcgcgacggcgtgacgctcgcggtgccgctgtacgcactgaaccaggtcgat
gcgcgccgctgcgagtggctggtgccgggaatgctgaaggagaaggtgcagctgctgctg
aaatcgctgccgcagaagctgcgccggcattgcgtgccgctgcccgactacgcggccggc
ttcgtcgaacgcacgggccgcgagcgcttcggcgcgggcggtctcgtcgaagcgctgatc
gccgacgtgcgcgagcagacgcaggtcgcgatgaaagcggccgacttcaagctcgagacg
ttgcccgcgcacctgttcatgaacttcaaggtgatcgacgagcacggccgccagctcgcg
atggggcgcaatctcgcgcagcttcgacaggaactcggcgcgcaggcgcagcagcagttc
cagaagatcgcggcggcgtcgacgctcgcggtcggcgccgatgccgacggcggcaccgcg
ccggccgcgtcgggcgagcccgccggcaaggacggccgcggcgcgaagggcggcaaaacc
gtcgcaccgcagacgctcgccgcgcccgagccgggcgcgaccgcactgtacgagaacctg
acgacgtggaacttcggcaagctgcccgagctgctggagatccggcggcgcggccagacg
ctgtacggctatccggcgctcgtcgatcgcggcacgcactgcgacgtcgaggtgttcgat
tcgcccgaggaagccgcgcggatccaccgtgcggggctgcgccggctgttcgcgctgcag
ctgaaggagccgatcaagtatctcgagaagaacctgccgggcctgcgcgagatggcgatg
cagtacatgtcgctcggcacgcaggacgagctgcgcgatcagctgatcgatacggcgctc
gatcgcgcgtgcctgcaggacccgctgccggacgacgacgcgagctttcatgcgcggcgc
gacgaaggccgcagccggctgaacctgctcgcgcaggaaatcgcgcggctcgtcgggcag
atcctcaccgaatacgcgggcgtcgtgaagaagctcgcgcaggcgaagccgttcgcgcag
gcgcacgcggacctgcagcagcagctgtcggcgctgatcggcaagcgcttcgtgatcgac
acgccttacgcgcagctcgtgcatttcccgcgctacctgaagggcatcgcactgcggatc
gacaagctgaaggccgatccggcccgcgacgcgaagcagctcggcgagctgcagccgctc
gtccagcagtaccagcgcgcggtgtcgcagcgcggcggcgtcgtcgacccgcggctcgcc
gagttccgctggctgctcgaggaattgcgcatttcgctgtttgcgcaggaactgcgcacg
ccgatgccggtctctgtcaagcggctgtacaaggtctgggaatcgatgcagcgctag
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