Balaenoptera musculus (blue whale): 118880599
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Entry
118880599 CDS
T09887
Symbol
PABPC1L
Name
(RefSeq) polyadenylate-binding protein 1-like isoform X1
KO
K13126
polyadenylate-binding protein
Organism
bmus
Balaenoptera musculus (blue whale)
Pathway
bmus03015
mRNA surveillance pathway
bmus03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bmus00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
118880599 (PABPC1L)
09123 Folding, sorting and degradation
03018 RNA degradation
118880599 (PABPC1L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bmus03019
]
118880599 (PABPC1L)
03041 Spliceosome [BR:
bmus03041
]
118880599 (PABPC1L)
Messenger RNA biogenesis [BR:
bmus03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
118880599 (PABPC1L)
mRNA cycle factors
Stress granule specific factors
118880599 (PABPC1L)
Spliceosome [BR:
bmus03041
]
Complex C
Other components
Complex C specific factors
118880599 (PABPC1L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_10
RBD_DEAH11
RRM_5
RRM_occluded
SET_assoc
RRM_3
Motif
Other DBs
NCBI-GeneID:
118880599
NCBI-ProteinID:
XP_036680172
UniProt:
A0A8B8V6B3
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All DBs
Position
15:complement(15578659..15602842)
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AA seq
697 aa
AA seq
DB search
MNSSGPGYPLASLYAGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQ
QPADAERALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFS
TFGNILSCKVVCDDHGSRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFKPRRERD
AELGARAMEFTNIYVKNFHVDVNEQCLQDLFSQFGKILSVKVMRDDSGHSRGFGFVNFET
HEEAQKAVMEMNGREVRGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKN
LDDSIDDEKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT
KPLYVALAQRKEERKAILTNQYMQRLSTMRALGSPLLGSFQQPASYFLPAAPQPPAQAPY
YGSGPPVQPAPRWTAQLPRPSSAYPPVASVVQPAAVSRRPSVPIGSARQISTHVPRLVPH
AQGVANIGTQTTGPGVAGCSSPRGPLLTHRYSLATPNTHRVSVSTPLSTMSTPSWRARSR
ACCWRSTTRSCCSCWSPQSPSTPRSKRLWRCCRTTRPRSRPECTCAGTRWVVVKGRVMEQ
PSPEAVRNGEGTFTDSQRTLWCHWLISEAPRRRSGEAVKIKGKEDRLCDGNWRGLRCRVG
RLPAPAASLRIGCLPPGTAWPHATCRNAWLGLVCVLA
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atgaactccagcggcccgggttacccgctcgcctcgctctacgcgggcgacctgcaccct
gacgtgactgaggccatgctctacgagaagttctcgcccgccggccccatcctgtccatc
cgcgtgtgccgcgacgtggccacccgccgctcgctgggctacgcctacatcaacttccag
cagccggccgacgcggagcgggcactggacacaatgaactttgaggtgatcaaaggccag
cccatccgcatcatgtggtcccaacgagacccaggacttcgcaagtcgggtgttggcaac
atcttcatcaagaacctggaagactccattgacaacaaggccttgtatgacaccttctcc
acctttgggaacatcctctcttgcaaggtggtgtgtgatgatcatggctcccgaggcttt
ggctttgtgcattttgagacccacgaggctgcacagaacgccatcagcaccatgaacggg
atgctgttgaatgaccgcaaagtctttgttggccacttcaagccccgacgggagcgggat
gcagagctgggagctcgggccatggagttcaccaatatctacgtgaagaacttccatgtg
gacgtgaatgagcagtgcctgcaggacctcttctcccagtttgggaagatactgagtgtc
aaggtgatgagggatgacagcggccactcccgcggctttggctttgtcaactttgagacg
catgaggaagcccagaaggctgtgatggagatgaacgggagggaggtgcgtggacggctg
ctctacgtcggccgggcccagaagcgggtggagcggcagaatgagctgaagcgcaggttc
gagcagatgaagcaggaccggctgacccgttaccagggcgtgaacctgtatgtgaagaac
ctggatgactccatcgatgatgagaaactgaggaaagagttctctccctatggagtgatc
accagtgccaaggtgatgacagagggtggccacagcaaagggtttggctttgtgtgtttt
tcctctccagaagaggcgacgaaggccgtgacagagatgaacgggcgcatcgtggggacc
aagccactgtacgtggcactggcccagcgcaaggaggagcggaaggccatcctgaccaac
cagtacatgcagcgcctctccaccatgcgggccctgggcagccccctcctgggctccttc
cagcagcctgccagctacttcctgcccgccgcgccccagcctccagcccaggccccatac
tatggctctggcccacctgtccagcctgcccccaggtggacggcccagctacccagaccc
tcgtccgcctacccgcctgtggcctcggttgtccagccagcagccgtgtctcggcgcccc
tcggtccccattggcagtgcaaggcagatctccacccacgtgccgcgcctggtgccccac
gcccagggagtggccaacatcggtacccagaccacaggacccggtgtggcaggatgctct
tcaccaagggggcctctcctgacacacagatattccttggcaacacccaacacccaccgg
gtgagcgtctctacccccttatctacaatgtccacacccagctggcgggcaagatcacgg
gcatgctgctggagatcgacaactcggagctgctgctcctgctggagtccccagagtccc
tcaacgccaaggtcgaagaggctctggcggtgttgcaggaccacgaggccacggagcaga
cctgagtgcacgtgcgccgggaccaggtgggtggtggtcaagggaagggtgatggagcag
ccgagcccagaagctgtacggaatggggaagggacattcacagactcccagagaacgctg
tggtgtcactggcttatctcagaggcaccaaggaggcgttcgggggaagctgtgaagatc
aaaggcaaggaggacagactgtgtgatgggaattggcgtggactccggtgccgagtgggc
cggctgcctgccccggcggcctcgctcagaataggctgccttcccccaggcaccgcctgg
ccccatgcgacctgccggaacgcctggcttgggctcgtctgtgtccttgcttga
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