Balaenoptera musculus (blue whale): 118885202
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Entry
118885202 CDS
T09887
Symbol
SYMPK
Name
(RefSeq) LOW QUALITY PROTEIN: symplekin
KO
K06100
symplekin
Organism
bmus
Balaenoptera musculus (blue whale)
Pathway
bmus03015
mRNA surveillance pathway
bmus04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
bmus00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
118885202 (SYMPK)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
118885202 (SYMPK)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bmus03021
]
118885202 (SYMPK)
03019 Messenger RNA biogenesis [BR:
bmus03019
]
118885202 (SYMPK)
Transcription machinery [BR:
bmus03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
118885202 (SYMPK)
Messenger RNA biogenesis [BR:
bmus03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
118885202 (SYMPK)
U7-dependent histone pre-mRNA processing factors
118885202 (SYMPK)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
PDS5
Cnd1
Cohesin_HEAT
INTS7_N
Motif
Other DBs
NCBI-GeneID:
118885202
NCBI-ProteinID:
XP_036689577
UniProt:
A0A8B8VXV0
LinkDB
All DBs
Position
19:9986781..10022918
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AA seq
1275 aa
AA seq
DB search
MAGSSGDSVTRRSVASQFFTQEEGPGIDGMTTSERVVDLLNQAALITNDSKITVLKQVQE
LIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKLIANLNMLLRD
ENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIR
THAIKFVESLIVTLSPRMADSEVPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLL
KFMVHPAISSINLTTALGSLANIARQRPMFMSEVIQAYETLHANLPPTLAKSQVSSVRKN
LKLHLLSVLKHQASLEFQAQITTLLVDLGTPQAEIARNMPSGKDARKRPRDDSDSTLKKM
KLEPNLGEDDEDKDLEPGPSATSKASAQISGQSDTDITAEFLQPLLTPDNVANLVLISMV
YLPEAMPASFQAIYTPVESAGTEAQIKHLARLMATQMTAAGLGPGVEQTKQCKEEPKEEK
VVKPESVLIKRRLSAQGQAISVVGSLSSMSTLEEEAPQAKRRPEPIIPVTQPRLAGAGGR
KKIFRLSDVLKPLTDAQXEAMKLGAVKRILRAEKAVACSGAAQVRIKILASLVTQFDSGL
KAEVLSFILEDVRARLDLAFAWLYQEYNAYLAAGAAGTLDKYEDCLIRLLSGIQEKPDQK
DGIFTKVVLEAPLITESALEVIRKYCEDESRTYLGMSTLRDLIFKRPSRQFQYLHVLLDL
SSHEKDKVRSQALLFIKRMYEKEQLREYVEKFALNYLQLLVHPNPPSVLFGADKDTEVAA
PWTEETVKQCLYLYLALLPQNHKLIHELAAVYTEAIADIKRTVLRVIEQPIRGMGMNSPE
LLLLVENCPKGAETLVTRCLHSLTDKVPPSPELVKRVRDLYHKRLPDVRFLIPVLNGLEK
KEVIQALPKLIKLNPIVVKEVFNRLLGTQHGEGNSALSPLNPGELLIALHNIDSSKCDMK
SIIKATNLCFAERNVYTSEVLAVVMQQLMEQSPLPMLLMRTVIQSLTMYPRLGGFVMNIL
SRLIMKQVWKYPKVWEGFIKCCQRTKPQSFQVILQLPPQQLGAVFDKCPELREPLLAHVR
SFTPHQQAHIPNSIMTILEASGKQEPETKEAPAGPLEEDDLEPLALAPXPAPRPPQDLIG
LRLAQEKALKRQLEEEQKLKPGGVGAPSSSSSSLSSSSARPGPPQLEEAIDFREEGPECE
XPGIFISVDDDSGLAEAALLDSSLEGPLPKEAAAGGLISKEERSPQTLTPAGEDTVKTPS
PTAEEAGEPETKGNS
NT seq
3828 nt
NT seq
+upstream
nt +downstream
nt
atggcaggcagcagcggggacagcgtcactcgccggagcgtggcatcacagtttttcaca
caagaggaggggccgggcattgatggcatgaccacatcagagagagtggtggatctcctc
aaccaggcagcactgatcaccaatgattcaaagatcacagtgctcaaacaggtccaggaa
ctgatcatcaacaaagatcccacactactggacaacttcctggatgagatcatcgctttc
caagcagacaagtccattgaagtgcgcaagtttgtcatcggcttcatcgaggaggcatgc
aagcgagacattgagttactgctgaaactgatcgcaaatctcaacatgctcctgagagat
gagaatgtgaatgtggtgaagaaggccatcctcaccatgactcagctctacaaggtggcc
ctgcagtggatggtgaagtcacgggtgatcagcgagctccaggaagcctgctgggatatg
gtgtctgccatggctggggacatcatcctactgttggactctgacaatgacggcatccgt
acccatgccatcaagtttgtggagagcctcattgtcaccctgtcgccccgcatggctgac
tcggaggtgccccgacgccaggagcacgacatcagcctggaccgcatccctcgtgaccat
ccctatatccagtacaatgtgctgtgggaagaaggcaaggcagccttagagcagttgctc
aagttcatggtgcaccccgctatctcctccatcaacctgaccacagccctgggctccctc
gccaatattgcccgccagaggcccatgttcatgtctgaggtgattcaggcctatgaaacc
ctgcacgccaacctgcccccaacgctggccaaatctcaggtgagcagcgtgcgtaagaac
ctcaagttgcacctgttgagtgtgctgaagcaccaagcctccttggagttccaggctcag
atcaccaccctgctggtagacctgggcacacctcaggctgagatcgcccgcaacatgccc
agtggcaaggatgcccgcaagcggccccgagatgactcagattccacgctcaagaagatg
aagcttgagcccaacctgggggaagacgacgaggacaaggacttggagccaggcccctca
gcgacctcgaaggcctcagcccagatctcaggccagtcagacacagatatcacagccgag
ttcctacagcctctgctgacacctgacaatgtggccaatctggtcctcatcagtatggtg
tacctgcccgaggccatgcccgcctccttccaagccatctacaccccagtggagtcagca
ggcactgaagcccagatcaagcacctggctcggctcatggccacacagatgacggccgca
ggactggggccaggcgtagagcagaccaaacagtgcaaggaggagcccaaggaggagaag
gtggtgaagccggagagtgtcctgatcaagcggcgcctgtcagctcagggtcaggccatc
tcggtagtgggctccctgagctccatgtccactctggaggaggaagcgccccaggccaag
aggaggccagagcccatcatccccgtcacgcagccccggctggcaggcgctggcgggcgc
aagaaaatcttccgtctgagtgatgtgctgaagcccctgaccgacgcccagngtgaggcc
atgaagctgggcgctgtgaagcggatcctgcgggctgagaaggccgtggcctgcagcggg
gcagcccaggtgcgcataaagatcctggccagcctggtgactcagttcgactcgggcctg
aaggccgaggtcctgtccttcatcctggaagacgtgcgggcccgcctggacctggccttt
gcctggctctaccaggagtacaacgcctacctagcagctggtgccgcgggcaccctggac
aagtatgaggactgcctcatccgcctgctctccggcattcaggagaagccagaccagaag
gatgggatcttcaccaaggttgtactggaggcgccgctgatcactgagagtgccctggag
gtgattcgcaagtactgtgaggatgagagtcgcacctacctgggcatgtccactcttcga
gacctgatcttcaagcgcccgtcccgccagttccagtacctgcatgttctgctagacctc
agctcccatgagaaggacaaggtgcgttcccaggccttgctattcatcaagcgcatgtac
gagaaggaacagctacgagagtatgtggagaagtttgccctcaactacctacagctcttg
gtccaccccaaccctccatctgtactctttggagctgacaaggacacagaggtggcagcg
ccctggactgaggagacagtaaagcagtgtttgtacctctacctggccctcctgcctcag
aaccacaagctgatccacgagctggcagccgtgtatactgaggccatcgctgacatcaag
aggacagtgctgagggtcatcgaacagccgatccgaggaatgggcatgaactcgcccgag
ctgctcctgctggtggaaaactgtcccaagggggcagagacactggtcacacgttgtctg
cacagcctcacggacaaagtcccgccctccccagagctggtgaagcgggtccgggatctc
taccacaagcgactgcccgatgtccgcttcctcatccctgtgctcaatgggctggaaaag
aaggaagtgatccaggccctgccaaagctcatcaaactcaaccccatagtggtgaaagag
gtcttcaaccgcctgctgggcacccagcacggtgaagggaactcagccttgtcccccctg
aaccctggagagcttctcatcgcattacacaacatcgactcctcgaagtgtgacatgaag
tccatcatcaaagccaccaacctgtgctttgcggagcggaacgtgtacacatcggaggtg
ctggccgtggtgatgcagcagctgatggagcagagtcccctgcccatgctgctcatgagg
accgtcatccagtccctgaccatgtacccccgcctggggggcttcgtcatgaacatcctt
tcccgcctcatcatgaagcaggtgtggaagtatcccaaggtgtgggagggcttcatcaag
tgctgtcaacgcaccaagccccagagcttccaggtcatcctgcagctcccaccccagcag
ctgggtgccgtctttgacaagtgcccggagctccgggagcccctgctggcccacgtccgt
tccttcaccccccaccagcaagcacacatccccaactccatcatgaccatcctggaggcc
agcggcaagcaagagccagagactaaggaagcacctgccgggcccctggaagaggatgac
ttagagccgctggccctggcgccgncccctgccccccgcccccctcaagacctcatcggc
ctgcggctggcccaggagaaggccttgaagcggcagctggaggaggaacagaagctgaag
cctgggggagtgggagccccctcctcgtcctcctcgtcgttgtcctcttcctcggcccgg
ccaggccctccccagctggaggaagccattgacttccgggaggaggggcctgagtgtgag
naccccggcatcttcatcagcgtggacgatgactcggggctggctgaggcggcactgctg
gactctagccttgagggacccctgcctaaggaagctgcagcgggcggattgatttcaaag
gaagagcggagcccccagaccctcacccctgccggtgaagacaccgtgaagactcccagc
cccactgctgaggaagccggggaacccgagaccaaggggaacagctga
DBGET
integrated database retrieval system
