Balaenoptera musculus (blue whale): 118885821
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Entry
118885821 CDS
T09887
Symbol
LIG1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
bmus
Balaenoptera musculus (blue whale)
Pathway
bmus03030
DNA replication
bmus03410
Base excision repair
bmus03420
Nucleotide excision repair
bmus03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bmus00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
118885821 (LIG1)
03410 Base excision repair
118885821 (LIG1)
03420 Nucleotide excision repair
118885821 (LIG1)
03430 Mismatch repair
118885821 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bmus03032
]
118885821 (LIG1)
03400 DNA repair and recombination proteins [BR:
bmus03400
]
118885821 (LIG1)
Enzymes [BR:
bmus01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
118885821 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
118885821 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
118885821 (LIG1)
DNA replication proteins [BR:
bmus03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
118885821 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
118885821 (LIG1)
DNA repair and recombination proteins [BR:
bmus03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
118885821 (LIG1)
NER (nucleotide excision repair)
Other NER factors
118885821 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
118885821 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
DDR
PucR
Motif
Other DBs
NCBI-GeneID:
118885821
NCBI-ProteinID:
XP_036690815
UniProt:
A0A8B8W1R7
LinkDB
All DBs
Position
19:8504235..8544373
Genome browser
AA seq
919 aa
AA seq
DB search
MQRSIMSFFQPTKEGKVKKPEKELSNSTRETESPPKVALKERNRVEPEGDSPVKRPGRKA
ARVLGSEGEEEEEEAPKPPKSQKPAPDSPQVSPPSPGTPPESSPSHPSTSPTAVSPSGIP
KRRTARKQLSKRTFQDVLQEQGKDEDGGAKKKKEEEEEELETPTESLTEPEGGKKKEAEE
GDQPRSPPEPLKTSTKPPTESVSEPKVAVKQGPQEDDQAKPPPKAPKTLNSFFSPRKPAI
KKEAKEEGPSALRKEETKGHLDPSSYNPAKNNYHPVEDACWKVGQRVPYLAVARTFEKIE
EVSARLRMVETLSNLLRSVAALSPADLLPVLYLSLNRLGPPQQGLELGIGDGILLKAVAQ
ATGRQLESVRAEAAEKGDVGLVAESSRSTQRLVLPPPALTAAGVFAKFRDIAQLAGSAST
AKKMDVIKGLFVACRHSEARFIARALSGRLRLGLAEQSVLAALAQAVSLTPPGQEFPPAV
VDAGKGKTAEARKTWLEEQGMILKQTFCEVPDLDRIVPVLLEHGLERLRKHCRLSPGVPL
KPMLAHPTRGVSEVLRRFEEAAFTCEYKYDGQRAQIHVLEGGEVKIFSRNQEDNTGRYPD
IISRIHKIKLPSVTSFILDAEAVAWDREKKQIQPFQVLTTRKRKEVDAAEIQVQVCLYAF
DLIYLNGESLVREPLSRRRQLLRENFVETEGEFVFATSLDTKDMDQIAEFLEQSVKDSCE
GLMVKTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLL
AAYDEESEELQAICKLGTGFSDEELEEHHQSLQALVLPAPRSYVRADGAVAPDHWLDPSA
VWEVKCADLSLSPIYPAARGLVDSEKGISLRFPRFVCVREDKKPEEATTSAQVASLYRKQ
SQIQNQQGAEPDSDLEDFY
NT seq
2760 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgaagtattatgtcatttttccagcccacgaaagagggcaaagtgaagaagcca
gagaaggagctatccaacagcaccagagaaacagagtcccctccaaaggtggcgctgaag
gagcggaatagagtggaacctgagggcgactctccagtgaagaggccagggaggaaggcg
gcccgggtcctgggcagcgaaggggaggaggaggaggaggaagcccccaagccccccaaa
agccagaagcctgctccagattccccacaagtctcccctcccagtcctggcacaccgcct
gagagcagcccttcccaccccagcacctctcccacggccgtctccccatcagggatcccg
aagcgtcgcacggcccggaagcagctttccaaacggacatttcaggatgtcctgcaagag
cagggcaaggacgaggacgggggagccaagaagaagaaggaggaggaggaagaagaatta
gagacaccaacagaaagcctcacagagcctgaagggggcaagaagaaggaagcagaagaa
ggggaccagcccaggtcaccccctgagcccctgaagacctccacaaagcccccaacagaa
agcgtttcagagcccaaggtggccgtgaagcagggaccacaggaggacgaccaggctaag
cctccccccaaagctcccaagacgctcaacagtttcttctctccccggaagccagcaatc
aaaaaagaagcgaaagaagagggacccagcgctctgagaaaggaggagaccaagggacac
ctggacccatccagctacaatcctgccaagaacaactaccatcccgtcgaagatgcttgc
tggaaggtgggccagagagtcccttacctggctgtggcccggacgtttgagaagatcgaa
gaggtttccgcgcggctccggatggtggagacactgagcaacctcctgcgctccgtggcg
gccctgtcacctgctgacctcctccccgtcctctacctcagcctcaaccgcctggggccg
ccccagcagggcctggagctcggcattggcgacggcatcctcctcaaggcggtggcccag
gccacaggccggcagctcgagtcggtccgggccgaggcggccgagaagggcgacgtgggg
ctggtggccgagagcagccgcagcacccagaggctcgtgttgcccccgcccgccctcacc
gccgccggcgtcttcgccaagttccgggacatcgcgcagctggccggcagcgcttccaca
gccaagaagatggacgtcatcaaaggcctctttgtggcctgccgccactcagaagcacga
ttcatcgccagggccctgagtggacggctgcgcctcgggctggcagagcagtcggtgctg
gcggccctcgcccaggccgtgagcctcaccccgccaggtcaagaattccccccagccgtg
gtggatgctgggaagggcaagaccgcagaggccagaaagacgtggctggaggagcaaggc
atgatcctgaagcagacgttctgcgaggtgcccgacctggaccggatcgtccccgtgttg
ctggagcacggtctggagcggctccggaagcactgcaggctgagcccaggggtccccctg
aaaccaatgttggcccacccaacccggggtgtcagcgaggtcctgaggcgctttgaggag
gcagctttcacctgcgagtacaaatacgatgggcagagggcacagatccatgttctggaa
ggcggggaggtgaagatcttcagcaggaatcaggaggacaataccggaaggtaccccgat
atcatcagccgcatccacaagattaaactcccatcagtcacatccttcatcctggacgcg
gaagccgtggcttgggaccgggaaaagaagcagatccagccgttccaagtgctcaccacc
cgcaaacgcaaggaggtggacgcggcagagatccaggtgcaggtgtgtctgtacgccttc
gacctcatctacctcaatggagagtccctggtacgtgagcccctttcccgacgccggcag
ctgctccgggagaacttcgtggagacagagggcgagtttgtctttgccacctctctggac
accaaggacatggaccagatcgccgagttcttggagcagtcggtgaaagactcctgcgag
gggctgatggtgaagaccctggatgtggacgccacctacgagatcgccaagaggtcacac
aactggctcaagctgaagaaggactacctcgacggcgtgggcgacaccctggacctcgtg
gtgatcggcgcctacctgggccgggggaagcgggccggccggtatgggggcttcctgctg
gccgcctacgacgaggagagcgaggagctgcaggccatctgcaagctcggaacgggcttc
agtgacgaggagctggaggagcatcaccagagcctgcaggccctggtgctgcccgcccca
cgctcctatgtccgggccgacggcgccgtggcccccgaccactggctggaccccagcgcc
gtgtgggaggtgaagtgcgcagacctctccctctcgcccatctacccggctgcccggggc
ctggtggatagcgagaagggaatctccctccgcttccctcggtttgtctgcgtccgtgag
gacaagaagccagaggaggccaccaccagtgcccaggtggcctctctgtaccggaagcaa
agtcagattcagaaccagcaaggcgcagagccggactccgacctggaagatttctactag
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