Balaenoptera musculus (blue whale): 118893470
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Entry
118893470 CDS
T09887
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
bmus
Balaenoptera musculus (blue whale)
Pathway
bmus03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bmus00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118893470 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bmus03019
]
118893470 (MTREX)
03041 Spliceosome [BR:
bmus03041
]
118893470 (MTREX)
03009 Ribosome biogenesis [BR:
bmus03009
]
118893470 (MTREX)
03016 Transfer RNA biogenesis [BR:
bmus03016
]
118893470 (MTREX)
Enzymes [BR:
bmus01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
118893470 (MTREX)
Messenger RNA biogenesis [BR:
bmus03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
118893470 (MTREX)
Spliceosome [BR:
bmus03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
118893470 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
118893470 (MTREX)
Ribosome biogenesis [BR:
bmus03009
]
Eukaryotic type
Pre-60S particles
Helicases
118893470 (MTREX)
Transfer RNA biogenesis [BR:
bmus03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
118893470 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
118893470
NCBI-ProteinID:
XP_036704957
UniProt:
A0A8C0CJ46
LinkDB
All DBs
Position
3:41412499..41550294
Genome browser
AA seq
1042 aa
AA seq
DB search
MADAFGDELFSVFEDDSTTAPGAKKDKEKEKGKWKGPPGSAEKAGRRFDGKLQSESTNIG
KNKRDADFEGTDEPIFGKKPRVEESITEDLSLSDLMPRVKVQSVETVEGCTHEVALPADE
DYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALR
EKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGS
EVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLH
KQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGD
QKGRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMV
EEVFSNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALF
ATETFAMGINMPARTVLFTSARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVD
EKMSPTIGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPG
VVEKVKNSEEQYNKIVIPNEESVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLV
KVKNEGDDFGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLRCSKESLKNSATEAAKPAKS
DEKGEMQVVPVLVHLLSAISSVRLYIPKDLRPLDNRQSVLKSIQEVQKRFPDGVPLLDPI
DDMGIQDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAIDIKSAKRELK
KARTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDL
SAEQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYLS
SFKPHLMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELE
NKFSEGITKIKRDIVFAASLYL
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgctttcggggatgagctcttcagtgtgtttgaggacgactcgaccactgcg
cccggagccaaaaaagacaaggaaaaggagaaggggaaatggaaggggccgccagggtct
gcggaaaaggccggaagacgttttgatggtaaattacaatctgagtcaactaatattgga
aaaaacaagagagatgcagacttcgagggcacagatgaacccatttttggaaagaagccc
agggtagaagagtcaataactgaagacttaagtttgtcagacttgatgcccagggtcaag
gtacaatcagttgaaactgttgaagggtgtacacatgaggttgcacttcctgcagatgaa
gattatctaccacttaaacctcgcgttggaaaagctgcaaaggaatacccgttcattctt
gatgcttttcaaagagaagccattcagtgtgttgataataatcagtctgttctagtatct
gcacatacatcagcaggaaaaactgtatgcgctgaatatgccattgcattggccttaagg
gaaaaacagcgtgtaatatttactagcccaattaaggccctgagtaaccagaaataccgt
gaaatgtatgaagaatttcaagatgttggtctgatgactggagatgttactattaatcct
acagcatcttgtcttgttatgaccacagagattttgagaagtatgctgtacagaggttct
gaagttatgcgagaagttgcttgggtcatatttgatgaaattcattacatgagagattca
gagcgtggtgttgtatgggaagaaactattattttgcttcctgataatgttcactatgtc
tttctttcggctactattccaaatgctcggcagtttgctgaatggatttgccacttacat
aaacagccttgtcatgtaatttacacagattatcggcctactccgttacagcactacatt
tttccagcagggggagatggtctgcaccttgtggttgatgaaaatggtgacttcagagaa
gataattttaatactgcgatgcaggtacttcgagatgctggtgatttggcaaaaggagat
cagaaggggagaaaaggaggaacaaagggaccatcaaatgtgttcaagattgtgaagatg
attatggaaagaaactttcaacctgtaattattttcagttttagtaagaaagattgtgaa
gcctatgcacttcagatgaccaaattagatttcaacacagatgaagaaaagaagatggtt
gaagaagtattcagtaacgcaattgactgcttgtcagatgaagataaaaagctccctcag
gttgaacatgtacttcctctcttgaagcgggggattggtattcaccatggtggtttactt
cctattttgaaagaaactatagaaattctcttttctgaaggattgataaaggccttattt
gccactgagacttttgctatggggattaacatgccagctagaactgttttatttacaagc
gcccgaaaatttgatgggaaggatttccgatggatttcctctggtgaatacattcagatg
tctggtcgtgctggaaggaggggaatggatgacagaggaattgtaattcttatggtagat
gaaaagatgagcccaacgattggaaaacaactacttaagggctcagctgatcctctaaat
agtgctttccatttgacctacaacatggttttgaacttactacgagtagaagaaataaat
cctgagtacatgttggaaaaatccttctaccagtttcagcattatagagcaattccagga
gtagtagagaaggtaaagaactcagaagaacagtataataaaatagtaataccaaatgaa
gaaagtgtagtcatctattataagattaggcagcagcttgccaaattgggtaaagaaatt
gaagaatatattcacaaaccaaaatattgcttaccatttctacaaccaggtcgtttggta
aaggtaaagaatgaaggagacgattttggctggggtgtagtggtgaatttctcaaaaaaa
tcaaatgttaagcctaattctggtgaactggatcctttatatgtagtggaagtacttctg
cgctgtagcaaagagagcttgaaaaattcagctactgaggctgcaaaaccagctaagtct
gatgagaaaggagagatgcaggttgttccagttttggtgcatctcctgtctgctatcagc
agtgttaggctttacattcctaaagaccttcgaccactggacaatagacagagtgtttta
aaatcaatacaggaagttcagaaacgttttcctgatggtgttcccttattagatcctatt
gatgacatgggcattcaagatcaaggactgaaaaaagtcatccagaaagtagaggctttt
gagcatcgaatgtattctcatccacttcacaatgatccaaatttggaaactgtgtatacg
ctttgtgaaaaaaaagcacagattgcaatagacattaaatccgcaaagcgagaactaaag
aaagcaagaactgtcctacaaatggatgagctcaaatgtcgcaaacgtgttttaaggagg
ttgggatttgctacgtcttctgatgtcatagagatgaaaggacgagtggcttgtgaaata
agcagtgctgatgagctccttctaactgagatgatgtttaatggccttttcaatgaccta
tctgcagaacaggcaacggcactactaagctgctttgtgtttcaagagaattctagtgag
atgcccaaattaacagagcaattagcaggaccacttcgtcaaatgcaggaatgtgctaaa
agaattgcaaaagtttcagcagaagccaaattggaaattgatgaggagacttacctaagc
tcatttaaacctcacttaatggatgtagtatatacctgggcaactggagctacatttgcc
catatctgcaaaatgacagatgtctttgaaggcagcataattcgttgtatgaggcgcctg
gaagaactacttcgacaaatgtgtcaagcagcaaaagccattggaaacactgagctggaa
aataaattttcagaaggaatcaccaaaatcaagagagatattgtgtttgctgccagcctc
tacttataa
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