Balaenoptera musculus (blue whale): 118894078
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Entry
118894078 CDS
T09887
Symbol
SCAF4
Name
(RefSeq) LOW QUALITY PROTEIN: SR-related and CTD-associated factor 4
KO
K13167
SR-related and CTD-associated factor 4
Organism
bmus
Balaenoptera musculus (blue whale)
Brite
KEGG Orthology (KO) [BR:
bmus00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bmus03021
]
118894078 (SCAF4)
03041 Spliceosome [BR:
bmus03041
]
118894078 (SCAF4)
Transcription machinery [BR:
bmus03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
118894078 (SCAF4)
Spliceosome [BR:
bmus03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR proteins
118894078 (SCAF4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
118894078
NCBI-ProteinID:
XP_036705621
UniProt:
A0A8B8X7Y8
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All DBs
Position
4:complement(131781473..131840366)
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AA seq
1145 aa
AA seq
DB search
MDAVNAFNQELFSLMDMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKV
PGLYVIDSIVRQSRHQFGTDKDVFGPRFSKNITATFQYLYLCPSEDKSKIVRVLNLWQKX
WSIQIEIIQPLLDMAAGTSNAAPVTENVTNNEGSPPPPVKVSSEPSQATTNSIPTVPQLP
SSDAFAAVAQLFQTTQGQQLQQILQTFQQPPKPQSPAIDNAVMAQVQAITAQLKTAPTQP
PEQKAAFPQPEQKTAFDKKLLDRFDYDDERKLWKKAKKEDAAAAAAAAAATTTAATTAPA
AAVAPSAPAAAVPSVAATAAFSXPQAPFGFPGDXMQQPAYTQHQNMDQFQPRMMAIQQDP
VQPSVPLPPNGQMPGFGLLPTPPFPPMAQSVIPPTPPVQQPFQTSFQAQSEPLTQKAHQE
MEVEQPCIQEVKRHMSDNRKSRSRSASRSPKRRRSRSGSRTRRSRHRRSRSRSRDRRRHS
PRSRSQERRDREKERERRQKGLPQIKPETASVCSTTLWVGQLDKRTTQQDVASLLEEFGP
IESINMIPPRGCAYIVMVHRQDAYRALQKLSRGNYKVNQKSIKIAWALNKGIKADYKQYW
DVELGVTYIPWDKVKPEELESFCEGGMLDSDTLNPDWKGIPKSMKMKCSKWRGRTSHTEP
VSPIPKPLPVPVPPIPVPAPITLPPHRLQVPPHSAGPPVVGALQPPTFTPPLGIPPPGFG
PGVPPPPPPPPFLRPGFNPMHLPPGFLPPGPPPPITPPVSIPPPHTPPINIPNSTIAGIN
EDTTKDLSIGNPIPTVVSGARGNAESGDSVKMYGSAVPPAAPTNLPTPPVTQPVSLLGTQ
GVAPGPVIGLQAPSTGLLGARPGLIPLQRPPGMPPPHLPRFPLMPPRPMPPHMMHRGPPP
GPGGFGMPPPHGMKGPFPPHGPFVRPGGVPGLGGPGPGPGGPEDRDGRQPPPQQPPPAPQ
PQQQPPTQPSQPQPPTQPQPFRNDNRQQFTSGRDQERFGRRSFGNRVENDRERYGNRNDD
RENSNRERREWGRRSPDRDRHRDLEERNRRSSGHRDRERDSRDRESRREKEENRGKEKPE
VTDRAGGNKTAEPPISQVGNVDTVSELDKGECESAVVKPSEELPAEATSSVEPEKDSGSA
AEAPR
NT seq
3438 nt
NT seq
+upstream
nt +downstream
nt
atggacgccgtcaacgccttcaaccaagagctcttttcacttatggatatgaaacctccc
atctctcgagccaagatgattctcatcacgaaagctgctattaaagctattaagctttat
aagcatgtagttcaaatagtagagaagttcatcaaaaagtgtaaaccagaatacaaggtt
ccgggattatatgtaatcgactcaattgtgagacagtctcgtcatcagtttggaactgat
aaagatgtttttgggccaagattctctaaaaacataactgccacattccaatatttgtat
ctttgtccatctgaagataagagtaaaatagttcgtgtgctgaacctttggcaaaaanna
tggagtattcaaattgaaattattcaaccgcttttggacatggcagcaggaaccagtaat
gccgccccagtaacagaaaatgttactaataatgaaggttcacctccacctcctgttaaa
gtttcttctgaaccctcacaagccactacaaactccataccaactgtaccacagttgccc
agctctgatgcttttgctgctgtggcccaactgtttcagacaactcaaggtcaacagctt
cagcagatccttcagacttttcaacagcctccaaaaccacagtctcccgccattgacaat
gctgtgatggctcaggttcaggctatcacagctcagttaaagacagctcctacacaacca
cctgaacaaaaagctgctttcccccaacctgaacaaaaaactgcatttgacaagaagcta
cttgatagatttgattatgacgatgagcggaagctgtggaagaaagcaaagaaagaagat
gctgctgctgccgccgccgccgcagccgccaccaccactgctgccaccacagcacctgct
gctgctgttgcgccctctgcacctgctgctgctgtaccttctgttgctgcgaccgctgct
ttctccntcccacaggcaccctttggatttcctggagatngcatgcagcaaccagcatat
acccagcaccaaaacatggatcagtttcaacctcgaatgatggcaatacagcaggatcca
gtgcaaccatcagttccacttcctcctaatggacagatgccaggatttggccttcttcct
acacctccatttcctcccatggctcagtccgtgattcctccaactccacccgtgcagcag
cctttccaaacttcctttcaggcacaaagtgaaccacttacacaaaaggcacatcaggaa
atggaagtagaacaaccttgtattcaagaggttaagcggcacatgtccgataacagaaag
tcaagatctagatcagcatccaggtcaccaaaaaggagacgatctcgatctggttctaga
actcgaaggtctcgtcatcgacgttctcgatctcggtccagagatagacgccgacattct
cctagatctcgatcccaagaaagaagggatcgggaaaaagaaagagagcgccgacaaaaa
ggccttcctcaaatcaaaccagaaactgctagtgtttgtagtactacactctgggtggga
cagctggacaaaaggactactcagcaggatgttgccagtctcttagaagagtttggtcca
attgaatcaattaatatgattcctcccagaggttgtgcctatattgttatggttcatagg
caagatgcttaccgtgccctgcagaaactgagccgaggaaactataaagtgaaccagaaa
tccataaagattgcctgggccttaaacaaaggaataaaggcagattataagcagtattgg
gatgtagaacttggtgttacttatattccgtgggacaaagtcaagcctgaagaactggag
agtttttgtgaaggaggaatgttggacagtgatacacttaatccagattggaagggaatt
cccaaaagcatgaaaatgaagtgctcaaaatggaggggcagaacctcacacacagaacca
gtatcacccatacctaagcctttacctgtgcctgtccctcctattcctgttcctgcacct
ataacattaccacctcacagattacaggtcccaccacattcagccggacctcctgtggtt
ggtgctctccagccacccaccttcacgcctcctttgggaattccccctccaggctttggt
cctggtgttcctcctcctccacctcctccaccatttttgcgcccaggattcaacccaatg
catttaccaccaggttttcttcctcctggacccccacctcctataactccaccagtatcc
attcctcctcctcacactccaccaataaacatcccaaactctactatcgctggtataaat
gaagacactacaaaagacttatctattggaaatcccattccaacagtggtgtctggggct
agaggaaacgccgagtctggtgacagtgtgaaaatgtatggttctgctgtgccacctgct
gcacccacgaatctgcccacccctcctgtaacccagcctgtttcacttcttggtactcaa
ggagttgcacctggccctgtaattgggctccaagccccatccactggtcttcttggtgcc
cgacccggcctgatcccactccagcgcccgccaggaatgcctccacctcacctgccacgc
tttcctctgatgccgcctcgtcccatgcctccgcatatgatgcatagaggtccgccacca
ggccccgggggctttgggatgccgccgcctcatggaatgaaaggtccctttcctccccat
ggcccctttgtccggcccggtggagtgccagggctcgggggcccagggccaggcccaggg
ggtcccgaggacagagacggaaggcagccgccgccgcagcagccgccgccggcaccgcag
ccacagcaacagccgccgacgcagccatcgcagccgcagccgccgacgcagccacagccg
tttagaaacgataacaggcagcagttcacttcaggtagagaccaagaaaggtttggaaga
agatcttttggaaatagggtggaaaatgaccgggaacggtatgggaaccgtaatgatgat
agagagaatagtaatcgtgaaaggagagagtggggaagaaggagccctgaccgggacagg
cacagagacttggaagagaggaatagacgctctagtgggcatcgggacagagagagagat
tctagagatagagagtctcgtagagagaaggaggaaaaccgaggcaaggagaagcctgag
gtgacagacagggcaggcggtaacaaaaccgctgaacctcccattagtcaagtgggaaat
gtagacactgtttcagaacttgataagggggagtgtgagtctgcagttgtaaaaccttcc
gaagagttacctgccgaggctacctcatccgttgaacctgaaaaggattctggctcagca
gccgaggctcctcgttag
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