Balaenoptera musculus (blue whale): 118894177
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Entry
118894177 CDS
T09887
Symbol
COL18A1
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
bmus
Balaenoptera musculus (blue whale)
Pathway
bmus04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
bmus00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
118894177 (COL18A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
bmus04147
]
118894177 (COL18A1)
00535 Proteoglycans [BR:
bmus00535
]
118894177 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
bmus00536
]
118894177 (COL18A1)
Exosome [BR:
bmus04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
118894177 (COL18A1)
Proteoglycans [BR:
bmus00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
118894177 (COL18A1)
Glycosaminoglycan binding proteins [BR:
bmus00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
118894177 (COL18A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
DUF959
Collagen_trimer
Fz
Laminin_G_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
118894177
NCBI-ProteinID:
XP_036705927
UniProt:
A0A8B8X8F5
LinkDB
All DBs
Position
4:143937278..143985482
Genome browser
AA seq
1753 aa
AA seq
DB search
MAPDPSGRRGHCGLLLLLACCLAPARADLMSWLWPGNAAGSTVAPASTPPGSSPVRPTED
TTTHVAPQDDPTQQWKALASPEPPLERPEVGQGQAPAVPSAVSTASPDTKEENIAGVGAK
ILNVALGIRSFVQLWDDTTPTESSATAGTPGPGNPTDPLTTPGPSSGPQDGGTTVWLSTG
APSSPDAQRTEAGTLPAPTQPPPSPDRPRALLREPAVPPPSPGRPSLSSARAGAPPQGSQ
PPPGWPQELDSEGLSPAAARPGQRHRRPDDRTRTPPPLALVTGSPGAHAGPWALSSDPSA
KLSHAALVALSGDRGAWVPRVANPAGPGLADSSALLGAAGRCLPLLPSLALCGHLGVGRF
WLPNHLHHASGEEVQAAARAWGALLQTHCHRFLAWFFCLLLAPACGPGALPGPPPCRQFC
EALEDACWSRLDGRGLPFPCASLPAREDGRCVFIGPPADSQVMEVGLQLLLGEPLPRQVA
LVHDPDVGPAYEFGVDVGGDGWAARSLLPSTFFRRFSLLVRVRPASARAGVLFAVTDAAQ
AVVLVGVKLAAARGAWQQVQLLYTEPGAARTHTAASFALPALDGRWTRLALTVDGTHAAL
FVDCKEVQRQPLARSPRGLQLEPDARLFVAQAGRADPDKFQGLISDLRLREEPQVSPLHC
LDEDEEDDDDRASGDLGSGLAETWEHIGEELGAPLGPRLPEAPPVTSPPLAGVGNQEDFR
TEETEEETTVSSLGAQTLPSLSTVTTWAGSEWSPGRGLKEGGLKGQKGEPGAQGPPGPVG
PQGPAGPAVQSPDAQPVPGPQGPPGPPGKDGAPGRDGEPGDPGEDGKPGDTGPQGFPGTP
GDVGPKGEKGDPGVGPRGPPGPQGPPGPPGPSFRHDRLTFIDMEGSGFGGDLESLRGPRG
VPGPPGPPGVPGLPGEPGRFGMNSSDVPGPAGLPGVPGRDGPPGLPGPPGPPGPPGKDGR
PGQTGQKGSLGEAGAPGPKGSKGDPGPIGTPGEHGLAGHPGPAGPAGPPGPPGPPGPPGP
GLAAGFDDMEGSGGPFWSTARGASGPQGPLGPPGVKGDPGVMGPPGTKGEVGADGAPGAP
GLPGREGAAGLQGPKGEKGPQGEKGDPGKDGVGQPGLPGPPGPPGPVVYVSEQDRALASV
PGPEGRAGLAGLPGPAGPKGDLGSRGQQGLPGPKGEKGEPGMVFSPDGRALTSAQKGAKG
EPGFRGPPGPYGRPGHKGEIGFPGRPGRPGMNGLKGEKGEPGDASVGFSARGPPGPPGPP
GPPGLPGTPVYDSNAFVESGRPGPPGLPGNQGPSGPKGDKGEVGPPGPPGQFPFDLLHLG
AEMKGEKGDQGAAGQKGERGEPGGGGFFSSSMPGPPGPPGYPGIPGPKGESIQGQPGPPG
PQGPPGIGYEGHQGPPGPPGPPGPPGPPSFPGPYRQTISVPGPPGPPGPPGPPGSMGTSS
GQVRVWATYQTLLDQVPEVPEGWLVYVADREELYVRVRNGFRKVLLEARTPLPRGTDNEV
AALQPPVVQLHEGNPYPRREPPPPTARSWRADDILAGPPRLTHAQPYPRAPHPGAYAHLR
PATPTASPAHTHHDFQPVLHLVALNSPQSGGLRGIRGADFQCFQQARAAGLAGTFRAFLS
SRLQDLYSIVRRADRAALPIVNLRDEVLSPSWEALFSGSEGQLKPGARIFSFDGRDVLQH
PAWPQKSLWHGSDPSGRRLTESYCETWRTEARAATGQASSLLAGRLLEQKAAGCYNAFIV
LCIENSFMTSSSK
NT seq
5262 nt
NT seq
+upstream
nt +downstream
nt
atggctccggaccccagcggccgccgcggccactgcggcctgctgctgctgcttgcctgc
tgcctcgcgcccgcccgggctgacctgatgtcctggctgtggcccggtaacgctgccggg
tccacggtcgcaccggcctctacgcccccgggcagctcacctgtgcggcccacagaggac
accaccacgcacgtggccccccaggatgaccccacccagcagtggaaagcccttgccagc
cctgagccacctctggagaggccggaggtgggccagggccaggcccccgctgtcccctcg
gcggtctccactgcgagcccggacacgaaggaggagaacattgccggcgtcggagccaag
atcctgaacgtggctctgggcatccggagcttcgtccagctgtgggacgacaccaccccc
accgagagctccgccacggcgggaacgccaggccccgggaaccccacggaccccctcacc
accccgggaccctccagcggcccccaggacggcgggaccaccgtctggctgagcacaggg
gccccgagctctccggacgcccagaggaccgaggccggcaccctgcctgcgcccacccag
ccgccgccctccccggacaggccccgggccctgctcagggagcctgcggtgccaccgcca
tccccaggtagaccttctctgtcctccgcgcgggccggggcccctccccagggaagccag
ccgcccccggggtggccccaggagctggacagcgagggactctcgcccgcggcagcccgt
cccggccagcggcaccgacgccctgatgaccgcacgcgcacgcctcctccgcttgccctg
gtgacgggctccccgggagcgcacgctggcccctgggctctctcctctgacccctctgcc
aagctgtctcacgccgcactcgtggctctaagtggggacaggggtgcttgggtcccccgc
gtggctaaccctgcggggcccggtctcgccgacagctccgcgctgctgggggctgccggg
cgctgcctgcccctactgccctccctggcgctctgtggccacctgggcgtcgggcgcttc
tggctgcccaaccacctccaccacgcgagcggcgaggaggtgcaggccgcggcccgggcc
tggggggcgctcctccagacccactgccaccgcttcctggcctggttcttctgcctgctg
ctggcccccgcctgtggccccggcgccctgcccggcccgccgccctgccgccagttctgc
gaggccctggaggacgcgtgctggagccgcctggacgggcgcgggctgccgttcccctgc
gcctcgctcccggcccgtgaggacgggcgctgcgtgttcattgggccgcctgcagacagc
caggtcatggaggtggggctccagctgctgctcggggagcccctgccgcggcaggtggcc
ctggtgcacgaccccgacgtgggacccgcctacgagttcggtgtggacgtgggtggtgac
ggctgggcggcccggagcctcctgcccagcacgttcttccgccgcttctccctgctggtg
cgcgtgcggccggcctcggcgcgcgcgggcgtgctcttcgcggtcacggacgcggcgcag
gcggtggtcttggtgggcgtgaagctggcggcggcgcgcggggcgtggcagcaggtgcag
ctgctctacaccgagcccggtgccgcccgcacacacacggccgccagcttcgcgctgccc
gcgctggacggtcgctggacgcgcctggccctcaccgtggacggcacgcacgccgcgctc
ttcgtggactgcaaggaggtccagcgccagcccctggcgcgctccccacgcggcctgcag
ctggagcccgacgcccgcctcttcgtggcccaggccggccgagcagaccctgacaagttc
cagggcctgatctcagatctgaggctgcgtgaggagccccaggtgagccccctgcattgc
ctggatgaggacgaggaggacgatgacgaccgggcgtcaggagacctgggcagcgggctg
gcggagacctgggagcatatcggggaggagttgggcgcacccctaggaccccggctcccc
gaggctcctccagtcacttctccacccttggctggagtgggcaaccaggaggatttcaga
actgaggagactgaggaggagaccacggtgtcttcgttaggagctcagaccctccccagc
ttgagcacagtcaccacgtgggccgggagcgagtggagccctgggcgcggcctgaaagag
ggaggcctgaagggccagaaaggagaaccaggcgctcagggcccccctggccccgtcggt
ccccagggtcccgcaggcccggccgtgcagagccccgatgcacagcccgttcccgggccg
cagggacccccggggcccccggggaaggatggcgcccccggaagggacggcgagcccggt
gatcctggcgaagatgggaaacctggggacaccgggccacagggcttcccaggaaccccg
ggagacgtgggccccaagggcgagaagggggatcctggggtcgggccgaggggaccccca
ggaccccaagggcctccggggccacccggaccctccttcagacatgacaggctgaccttc
atcgacatggaggggtccgggtttggtggcgacctggagagcctccgcggccctcgaggt
gtccccggcccccctgggccccctggcgtcccaggcctgcccggagagccaggccgcttc
gggatgaacagctcagacgtccccggacccgcaggccttcccggagtgcctgggcgggat
gggccccccgggcttcctggacccccaggacccccaggtcctccagggaaagatgggcga
ccaggacagaccggccagaaaggcagccttggcgaggccggcgccccaggacccaaggga
agcaagggagaccccggccccatcggcacgcctggggagcacggcctggcaggacacccc
ggaccagcaggacccgcaggaccaccagggcccccgggcccccccgggcccccaggcccc
gggctcgctgcggggtttgacgacatggaaggctccgggggccccttctggtcgacagcc
cgaggtgccagtgggccgcagggaccgcttggcccgcctggagtcaagggggatcctgga
gtcatggggccaccagggaccaagggagaggtcggagcagacggagctcctggggccccc
ggccttccaggcagggagggtgcagccggactccagggaccaaaaggagaaaaagggccc
cagggagagaaaggcgacccagggaaggacggagtggggcagccaggcctcccgggaccc
cccggacccccagggcctgtcgtctacgtgtcggagcaggacagggcactggcgagcgtg
ccgggccccgagggccgggcggggctcgcaggcctccccggaccagccgggccgaaggga
gacctgggctccagaggccagcagggcctcccgggacccaagggcgagaagggtgagccg
ggcatggtcttcagccctgacggcagagcgctgacctccgcccagaaaggagccaagggg
gagcctggcttccgaggacccccgggtccctatgggcggcccgggcacaagggagagatt
ggcttccctggacggccggggcgccccgggatgaacggactgaaaggggagaagggggag
ccgggagatgccagcgtgggattcagcgcgaggggtccgcccggcccgcctgggccccca
gggcccccgggccttcccgggactcctgtctatgacagcaacgcgtttgtggagtctggc
cgccctggacccccgggattgccagggaaccaggggccttctggaccgaaaggtgacaaa
ggagaagtgggcccacccgggccaccagggcagttcccgttcgacctcctgcacctgggc
gctgagatgaagggtgagaaaggtgaccaaggggccgccgggcagaaaggagaaaggggc
gagcccgggggcggcgggttcttcagctccagcatgcctggcccccccggcccgccaggc
taccctgggattccggggcccaagggagagagcatccagggccagcctggccctcctgga
cctcagggaccccctggcatcggctacgagggacaccaggggcctcctgggccccccgga
cctccagggcccccgggacccccatcctttcctggcccttacaggcagactatcagtgtt
cctggccccccaggcccacctgggcccccaggaccgcccggatccatgggcacctcctca
gggcaggtgagggtctgggccacgtaccagaccctgctggaccaggtgcccgaagtgcca
gagggctggctcgtctatgtggccgacagggaggagctgtacgtccgggtccggaacggg
ttccggaaggttctgctggaggcccgcacgcccctcccccgcgggacggacaacgaggtg
gccgctttgcagccccccgtggtgcagctgcacgagggcaacccgtacccccgccgggag
cccccgccccccacagcgcggtcctggcgggctgacgacatcctggccggccccccgcgc
ttgacacacgcccagccctaccccagggccccgcaccccggcgcctacgcgcacctccgg
ccggcaacccccacggcctcacccgcccacactcaccacgacttccagccggtgctccac
ctggtggcgctcaacagcccgcagtcggggggccttcgcggcatccgcggcgccgacttc
cagtgcttccagcaggcgcgcgcggcggggctggcgggcaccttccgcgccttcctctcc
tcgcggctgcaggacctctacagcatcgtgcgccgcgcagaccgcgccgccctgcccatc
gtcaacctcagagatgaggtgctgtctcccagctgggaggccttgttctcgggctccgag
ggccagctgaagcctggtgcgcgcatcttctctttcgacggcagagacgtcctacagcac
cccgcctggccccagaagagcttgtggcacggctcggaccccagtgggcgccggctgacg
gagagctactgcgagacgtggcggactgaggccagggcggccacgggccaggcctcctcg
ctgctggcgggccggctgctggagcagaaagcggcgggttgctacaacgccttcatcgtc
ctctgcattgagaacagcttcatgacctcctcctccaagtag
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