Balaenoptera musculus (blue whale): 118895420
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Entry
118895420 CDS
T09887
Symbol
RFC1
Name
(RefSeq) replication factor C subunit 1 isoform X1
KO
K10754
replication factor C subunit 1
Organism
bmus
Balaenoptera musculus (blue whale)
Pathway
bmus03030
DNA replication
bmus03410
Base excision repair
bmus03420
Nucleotide excision repair
bmus03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bmus00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
118895420 (RFC1)
03410 Base excision repair
118895420 (RFC1)
03420 Nucleotide excision repair
118895420 (RFC1)
03430 Mismatch repair
118895420 (RFC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bmus03032
]
118895420 (RFC1)
03400 DNA repair and recombination proteins [BR:
bmus03400
]
118895420 (RFC1)
DNA replication proteins [BR:
bmus03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
118895420 (RFC1)
DNA repair and recombination proteins [BR:
bmus03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
118895420 (RFC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
AAA_lid_RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
Rad17
BRCT_2
AAA_14
AAA_5
RuvB_N
AAA_33
AAA_17
AAA_7
AAA_30
AAA_16
AAA_18
nSTAND3
Zeta_toxin
RNA_helicase
NTPase_1
NPHP3_N
AAA_19
TIP49
Motif
Other DBs
NCBI-GeneID:
118895420
NCBI-ProteinID:
XP_036708291
UniProt:
A0A8B8XFL5
LinkDB
All DBs
Position
5:76310836..76384609
Genome browser
AA seq
1146 aa
AA seq
DB search
MDIRKFFGVIPSGKKVVSETAKKNEKTKSAEETIKAKKGIKEIKVNSSCKEDDFKQKQPN
KKKRIIYDSDSESEETVQVKNSKKRPEKLPLSSKPAKIRHQDPVTYISETDEEDDFVCKK
AASKSKENGGSPNSYLGASNMKKNEENTKTLNTKNKPLSPMKLTPTSVLDYFGTASVQRS
DKKMVASRRKEPSQSADDSRLNDEAIAKQLQLDEDAELERQLHEDEEFARTLAMLDEEPK
TKKAQKDPGERETFSFVQASLYKAEKPKYHHKEQFSGNRKNCSPKKQTKYESSKESQQHS
RSSTHKIGETSSPKTSSKLTLLKKKEESSNKETEPMASKRKENAIELKETRTPKKIKSSP
AKKESISPEDSEKRRTNYQAYRSYLNREGPKALGSKEIPKGAENCLEGLTFVITGVLESI
ERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIIDEDGLLNLIRT
MPGKKSKYEIAAEAEMKKEKSKLERTPQKNDQGKRKISPTKKESESKKCKLTPKKESPIK
SIKKETSMFQRGLHFKEQVAEETNGDSWARNLADDSSENKVENLLWVDKYKPASLKTIIG
QQGDQSCANKLLRWLQNWHKSPSEDKKHAAKFGKFAGKDDGSSFKAALLSGPPGVGKTTT
ASLVCQELGYSYVELNASDTRSKNSLKEIVAESLNNTSIKGFYSSGAAHSVGTKHALIMD
EVDGMAGNEDRGGIQELIGLIKHTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQI
KGAMMSIAFKEGLKIPPPAMNEIILGANQDIRQVLHNLSMWCARSKALTYDQAKADSHRA
KKDIKLGPFDVARKVFVTGEETAHMSLVDKLDLFFYDYSIAPLFVQENYIHVKPVAAGGD
MKKHLMLLSRAADSISDGDLVDRQIRNKQNWSLLPTQAIYASVLPGELMRGYMTQFPTFP
SWLGKHSSMGKHDRIVQDLALHMSLRTYSSKRTVNVDYLSHIRDALVQPLTSQGIEGVQD
VVALMDTYYLMKEDFENIMEISSWGDRPSPFSKLDPKVKAAFTRAYNKEVHLIPYSLQAV
KIHRHSTGPALDSEYNEELNEDDSQSDEKDQDTLETDAMIKKKTKSSKPSKSEKESRKGK
GKSSKK
NT seq
3441 nt
NT seq
+upstream
nt +downstream
nt
atggatattcgaaaattctttggggttataccaagtggaaagaaagttgtaagtgaaaca
gcaaagaagaatgagaaaactaagtctgctgaagaaactataaaagcaaagaaaggaata
aaggaaatcaaggtaaatagttcttgtaaagaagatgacttcaagcagaagcaaccaaac
aagaaaaagaggatcatctatgattcagattcagaatcagaggagacagtgcaggtaaaa
aactccaaaaagcgaccagaaaaattgccactgtcttctaaacctgctaaaattcgacac
caggatcctgttacatacatttcagaaacagatgaagaagatgactttgtgtgtaagaag
gcagcctctaagtcaaaagagaatggaggatctccaaatagttatcttggagcatcaaac
atgaaaaagaatgaagaaaacactaagacactaaacactaagaataagcctttgtcaccg
atgaaacttacccccacatcagtgcttgattattttggaacggcaagtgtccaaagatcg
gataagaagatggtggcaagcagaagaaaagagccttcacaaagtgcagatgattccaga
ttaaatgatgaagccatcgccaagcaattgcaacttgatgaagatgcagagctagagaga
caactgcatgaagatgaagagtttgccagaacattagccatgttggatgaagaacccaag
accaaaaaggctcaaaaggacccaggagagagagagacgttttcatttgtacaagccagt
ttatataaagcagaaaaacctaaatatcatcataaagaacaattttcaggtaacagaaag
aactgcagtcctaagaagcaaactaaatatgaaagttcaaaagaatctcagcaacattcc
aggtcatctactcataaaataggagaaacttcttctccaaaaaccagttccaagctgaca
cttttgaaaaaaaaagaagaaagttctaataaagaaacagagcctatggcctcaaaaaga
aaagaaaatgccattgagttaaaagagacaagaactcctaagaaaatcaaaagttctcca
gctaaaaaagagtctataagtcctgaagattctgaaaagagacgcactaattatcaagct
tatcgaagctacttaaatcgagaaggtcccaaagctctgggctccaaagagataccgaag
ggagctgaaaattgcttggaaggccttacatttgtaatcacaggagtgctggagtccatt
gaacgagatgaggccaagtctctaattgagcgttatgggggaaaagtaacaggaaatgtc
agcaagaaaacaaactaccttgtcatgggtcgtgacagtggtcagtccaagagtgataag
gcagcagccttgggaacaaaaattattgatgaggatggcctattgaatctgattcgaact
atgccaggcaagaagtccaagtatgaaatagcagctgaagctgagatgaagaaagaaaaa
tccaaattggaaagaacaccccaaaaaaatgaccaaggaaaacgaaaaattagtccaact
aagaaggaatcagaatctaaaaagtgcaaactgactcccaaaaaggaaagccctataaag
tcaataaaaaaggaaacaagtatgtttcagagaggcctgcacttcaaggagcaggtggct
gaggaaacaaatggtgacagctgggctaggaacttggctgatgacagcagtgaaaacaaa
gtggaaaatttgctctgggtggataaatataagccagcctcgctcaagaccataattgga
cagcaaggtgaccagagctgtgccaacaaactcctacgctggctccaaaactggcacaag
agtccatccgaagataagaaacacgcggcaaagtttggtaaatttgctggcaaagatgat
ggctccagttttaaagctgcattgctctcaggccctcccggtgttggcaaaacaaccaca
gcttctctggtttgtcaggaattgggatatagctacgtggaactgaatgcaagtgacact
cggagtaagaacagtttgaaggagattgttgctgaatcgctgaataataccagcatcaaa
ggcttttattcaagcggagcagcccattcagtaggcacgaaacatgctctcatcatggat
gaagtagatggcatggccggcaatgaggacaggggaggaattcaggaattaattggcctg
ataaaacatacaaaaattcccattatttgtatgtgcaatgatagaaatcatcccaagatt
cgatctttggttcattattgttttgatcttcgttttcaaagacctcgggttgaacaaatt
aagggtgctatgatgtctattgcatttaaagagggtttaaagatcccccctccagctatg
aatgaaataattttgggagccaatcaagatatcagacaggttttacacaatctgagtatg
tggtgtgcacgaagtaaagcactaacctatgaccaggctaaggctgattctcatagagcc
aaaaaggatatcaaattgggcccatttgatgttgcccggaaagtgtttgtaactggagag
gagactgctcatatgtcacttgtggacaaattagatctctttttttatgattattcaata
gcacccctctttgtccaggagaactacatacatgtgaagcctgtagccgcagggggtgac
atgaaaaagcacttgatgcttttaagcagagcagcagacagcatatctgatggtgaccta
gtggaccgtcagatccggaataagcaaaactggagtcttctgcccacacaggccatttat
gccagtgttcttcctggagagttaatgagggggtacatgacccagtttcctaccttccca
agttggttggggaagcactcatctatgggcaaacatgatcgtattgttcaggacctagca
ttgcatatgagtctcagaacttactccagcaaaaggactgtaaacgtggattatctgtca
catataagggatgcacttgtacagcccttgacctcacaagggatagaaggagtacaggat
gttgttgctcttatggacacgtattatttgatgaaagaagactttgagaatatcatggaa
attagcagctggggagacagacctagtcccttctccaagctggatcccaaggtgaaagca
gccttcacaagagcttacaataaggaagtccaccttattccgtattcactccaggcagta
aagatacacagacacagcacaggcccagcgctggattctgaatacaatgaagagttaaat
gaagatgactctcaatctgatgagaaagaccaggatactttggaaactgatgctatgatc
aagaaaaagacaaaatcttcaaagccttcaaaatcagaaaaagagtccagaaaaggaaaa
ggaaaaagttcaaagaaatga
DBGET
integrated database retrieval system
