Balaenoptera musculus (blue whale): 118902140
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Entry
118902140 CDS
T09887
Symbol
RTCB
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
bmus
Balaenoptera musculus (blue whale)
Brite
KEGG Orthology (KO) [BR:
bmus00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bmus03016
]
118902140 (RTCB)
Enzymes [BR:
bmus01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
118902140 (RTCB)
Transfer RNA biogenesis [BR:
bmus03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
118902140 (RTCB)
Prokaryotic type
tRNA splicing ligases
118902140 (RTCB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
118902140
NCBI-ProteinID:
XP_036722024
UniProt:
A0A8C0CW42
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All DBs
Position
10:complement(89678464..89699750)
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AA seq
505 aa
AA seq
DB search
MSRSYNDELQFLEKVNKSCWRIKKGFVPNMQVEGVFYVNDALEKLMFEELRNACRGGGVG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI
NCGVRLLRTSLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNE
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcagttataacgatgaactgcagttcttggaaaaggtcaataaaagctgctgg
agaatcaagaagggcttcgtgcccaacatgcaggttgaaggagttttctatgtgaatgat
gctctggaaaaattaatgtttgaagaattaaggaatgcctgtcgaggtggtggtgttggt
ggcttcctgccagccatgaaacaaattggcaatgtggccgccctgcctgggattgttcat
cgatccattgggcttcctgatgtccattcaggttatgggtttgctattgggaatatggca
gcttttgatatgaatgaccctgaagcagtggtatccccaggtggtgtcggatttgacatc
aactgtggtgtccgcttgctaagaaccagtttagacgaaagtgatgtccagcctgtgaag
gagcaacttgcccaagctatgtttgaccacattcctgttggggtggggtcaaaaggcgtc
atcccaatgaatgccaaagacttggaggaggccttggagatgggcgtggactggtccctg
agagaaggctacgcctgggcggaagacaaggagcactgtgaggagtacgggaggatgctg
caggccgaccccaacaaggtctctgccagggctaagaagagaggcctgccccagttgggg
actctgggagcaggcaaccactatgcagaaatccaggttgtggatgagattttcaatgag
tatgctgctaagaaaatgggtatcgaccataagggacaggtgtgtgtgatgatccacagt
ggaagcagaggcttgggccaccaagtagccacagatgcgctggtagctatggaaaaagcc
atgaagagagacaagattatagtcaatgaccgtcagttggcttgtgctcgaatcgcttcc
ccagagggtcaggactacctgaagggaatggcagcggctgggaactatgcctgggtcaac
cgctcttccatgaccttcttaacccgtcaggcttttgccaaggtcttcaacacaacccct
gatgacttggacctacatgtgatctatgatgtttctcacaatattgccaaagtagaacag
catgtggtggatggaaaggaacggactctgttagtacacaggaagggatccacccgcgct
ttccctcctcaccatcccctcattgcggttgattaccaactcactggacaaccagtgctc
attggcggcaccatgggaacctgtagctatgttctcactggcactgagcagggcatgacc
gagacctttggaacaacttgtcatggagcgggccgtgcactgtcccgagcaaagtcaagg
cgtaatttagatttccaggatgtcctagacaaattggcagacatgggaattgcaatccgt
gttgcttcacccaagctggttatggaagaggcacctgagtcctataagaatgtaactgat
gtggtgaacacctgccatgatgccggaatcagcaagaaggccattaaactgagaccgatt
gctgttatcaaaggatag
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