Balaenoptera musculus (blue whale): 118904932
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Entry
118904932 CDS
T09887
Symbol
CDC40
Name
(RefSeq) pre-mRNA-processing factor 17 isoform X1
KO
K12816
pre-mRNA-processing factor 17
Organism
bmus
Balaenoptera musculus (blue whale)
Pathway
bmus03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bmus00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118904932 (CDC40)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bmus03041
]
118904932 (CDC40)
Spliceosome [BR:
bmus03041
]
Complex C
Other components
Step II factors
118904932 (CDC40)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WDR55
EIF3I
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR75_1st
Beta-prop_EIPR1
Beta-prop_TEP1_C
WD40_RFWD3
Beta-prop_RIG_2nd
ANAPC4_WD40
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
Beta-prop_SPT8
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_NWD2_C
WD_LRWD1
WDR54
Beta-prop_Vps41
Motif
Other DBs
NCBI-GeneID:
118904932
NCBI-ProteinID:
XP_036726982
UniProt:
A0A8B8YWV9
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Position
12:complement(50344045..50400309)
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AA seq
579 aa
AA seq
DB search
MSAAIASLAASYGSGSGSESDSDSEGGRCSLPAADSLMHLTKSSSDKSSLAVAVDSAPEV
AVKEDLETGVHLDPAVKEVQYNPTYETMFAPEFGPENPFRTQQMAAPRNMLSGYAEPAHI
NDFMFEQQRRTFATYGYALDPSLDNHQVSTKYIGSVEEAEKNQGLTVFETGQKKIEKRKK
FKENDASNIDGFLGPWAKYVDEKDVAKPSEEEQKELDEITAKRQKKGKQEEEKPGEEKTI
LHVKEMYDYQGRSYLHIPQDVGVNLRSPVPPEKCYLPKKQIHVWSGHTKGVSAVRLFPLS
GHLLLSCSMDCKIKLWEVYGDRRCLRTFIGHSKAVRDICFNTAGTQFLSAAYDRYLKLWD
TETGQCISRFTNRKVPYCVKFNPDEDKQNLFVAGMSDKKIVQWDIRSGEIVQEYDRHLGA
VNTIVFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGKWLACQS
MDNQILIFGAQNRFRLNKKKIFKGHMVAGYACQVDFSPDMSYVISGDGNGKLNIWDWKTT
KLYSRFKAHDKVCIGAVWHPHETSKVITCGWDGLIKLWD
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atgtcggctgcgattgcgtctctggctgcttcgtatggttcgggttcagggtccgaatcg
gactcggacagtgagggtggacggtgttcgctgccagccgcggactcccttatgcacttg
accaaatcgtcttcagataagtcctctctggcagtggcggtggactccgctccggaggtg
gcagttaaggaagatttggagactggagttcaccttgaccctgctgtcaaagaggttcaa
tataatcctacctatgagaccatgtttgctcctgagtttggaccagaaaatcccttcaga
acacagcaaatggctgcccctagaaatatgctttctggatatgctgaaccagcccatatc
aatgattttatgtttgaacagcaaagaagaacttttgccacatacggttatgcgttggac
ccttcattagataaccatcaagtgtctactaagtatattggttctgtagaagaagcagaa
aaaaatcaaggtttaacagtgtttgaaactggtcagaagaaaatagaaaagaggaaaaaa
ttcaaagaaaatgatgcatctaacattgatggtttcttgggaccatgggcaaaatatgtg
gatgaaaaagatgtagccaaaccttcagaagaagaacaaaaagaattggatgaaattaca
gcaaagaggcagaaaaaaggcaaacaggaagaagagaaacctggagaggaaaagacaatc
ttacatgttaaagaaatgtatgactatcaaggcaggtcctatcttcacatacctcaggat
gttggtgttaatctgcggtcacctgtgccacctgagaagtgttatcttcccaaaaaacaa
attcatgtgtggtccggacacacaaagggcgtcagtgcagtcagattgtttcccctctcc
ggccatttgttgctgtcttgttccatggactgtaaaattaagctatgggaggtttatgga
gacaggcgctgtctgcgaacatttattggtcacagtaaagctgttagggacatctgcttt
aatactgcaggaacacagttcctcagtgcagcttatgacaggtatcttaagctctgggac
actgagacaggacagtgtatatcaagatttacaaaccgaaaagtaccctattgtgtcaaa
tttaatcctgatgaagataagcaaaatctctttgtggctgggatgtctgataaaaagatt
gtgcaatgggacattcgaagtggagaaattgtacaggaatatgatcggcatttgggagct
gtcaacaccattgtttttgttgatgagaataggagatttgtgagcacatctgatgataag
agcctaagagtttgggaatgggatatccctgtggatttcaagtatatagcagaacccagc
atgcactcaatgcctgcagtgactttgtctccaaatgggaaatggctagcgtgccaatca
atggacaaccaaatcttaatttttggagcacagaacagatttagattaaataagaaaaaa
atttttaagggccatatggtagcaggctatgcttgtcaggtagacttttcaccagacatg
agctatgtgatttcaggagatggaaatggaaaattaaacatctgggactggaagaccaca
aaactctacagtagattcaaagctcatgataaagtgtgtataggtgcagtgtggcatcct
catgaaacatctaaagtcataacttgtggttgggatggtctcattaaattgtgggattaa
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