Burkholderia mallei SAVP1: BMASAVP1_A2259
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Entry
BMASAVP1_A2259 CDS
T00457
Symbol
hrpA
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
bmv
Burkholderia mallei SAVP1
Brite
KEGG Orthology (KO) [BR:
bmv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bmv03019
]
BMASAVP1_A2259 (hrpA)
Enzymes [BR:
bmv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
BMASAVP1_A2259 (hrpA)
Messenger RNA biogenesis [BR:
bmv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
BMASAVP1_A2259 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
WHD_HA2
DEAD
AAA_22
AAA_19
AAA_23
NACHT
T2SSE
nSTAND3
FtsK_SpoIIIE
nSTAND_NTPase5
Motif
Other DBs
NCBI-ProteinID:
ABM50290
LinkDB
All DBs
Position
I:complement(2251506..2255633)
Genome browser
AA seq
1375 aa
AA seq
DB search
MSNVPKSPAQKRAGTPGEPQPAGAAAPRPPRPRQAPPAQARAPRAERRDAGPEAARAPHA
PRTRCAPNPVPPITFAESLPVSGKRDEIARAIAAHPVVIVCGETGSGKTTQLPKICLALG
RGLGAGGAGLIGHTQPRRLAASSTGRRIAEELGTPFGEVVGYKVRFTDNLAPGASVKLMT
DGILLAETQTDPLLKAYDTLIIDEAHERSLNIDFLLGYLRQILPRRPDLKLIVTSATIDA
ERFARHFGSDERPAPVIEVSGRLYPVEVRYRPIADDRPAAVRHAEGGSSGRDRAKSAREA
ERDLMDGIVDAVDELCREGPGDVLVFLPGEREIRDAAEALRKHHPPHTEILPLFARLSAA
EQERVFKASNARRIVLATNVAETSLTVPGIRYVVDTGLARVKRYSYRNKVEQLQIEPISQ
AAANQRAGRCGRVADGICIRLYEESDFAGRARFTDPEILRSSLASVILRMKSLHLSAIES
FPFIEPPPGRAIADGYQLLNELGAVDDENALTPLGRELARLPLDPRVGRMILAARDQQAL
REVLVIASALSVQDPRERPVDAQEQADQAHRRFADERSEFLQWLRIWAWFEEAVAHKKSN
RQLVDACRQHFLSHLRLREWRDVHSQLLTVVREHGWRLNEADATFEQIHLSLLTGLLGNI
GFKAEDEPHYLGARGIKFHLWPGSALVKKAGRWVMAAELVETSRLYARCIAKIEPEWIER
IGAHLLKKSLSEPHWEKRPAQVAAFERATLYGLTIYHRRRVAFGRQDPARARELFIRGAL
VDGEFDTKLAFFAHNRKLLADIEQLEHKSRRQDVLVDDELIHAFYDQAIPAGIHTGAAFE
RWYRDEVSKSGQPEDKLRLLYLSRDDLMRHEAAGVTTELFPKRVTMAGVEMALAYHFEPG
SPRDGVTLAVPLFALNQVDARRAEWLVPGMLKEKAHLLLKSLPQKLRRHCVPLPEYAAGF
VERAGRERFGAGGLVDALIADVREQTQVATKTSDFKLETLPAHLFMNFKVIDEHGRQLAM
GRNLAQLRAELGAQAQQHFQKIAAAATLAPAGEPAAAAAGASGARARRVPLGAPPRAAEP
AAQAGAAAGATALYENLTTWNFGKLPELLEIRRRGETLFGYPALVDRGTHCDVEVFDSPD
EAARIHRAGLRRLFALQLKEPIKYLEKNLPGLREMAIQYMSLGTQDELRDQLIATALDRA
CLQEPLPADDASFHARRDEGRSRLNLLAQEIARLVGQILAEYAGLAKKLAQAKPFPAAHA
DMQGQLAALVGKRFVVDTPYAQLAHFPRYLKGIALRIDKLKADPARDARQAAELQPLAQH
YQRSVAQRGGVADARLAEFRWLLEELRISLFAQELRTPMPVSVKRLYKVWESMQR
NT seq
4128 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaatgtacctaaaagtcccgcgcaaaaacgtgcgggcacgccgggcgagccgcag
cccgccggcgccgctgcgccgcggccaccgcgcccccggcaggcgccgcccgcgcaggcg
cgcgcgccgcgcgccgagcgccgcgacgccggccccgaagccgcccgcgcgccgcatgcg
ccgcgcacgcggtgcgcgccgaatcccgttccgccgatcacgtttgccgaaagcttgccc
gtgtcgggcaagcgcgacgagatcgcgcgcgcgatcgccgctcacccggtcgtgatcgtc
tgcggcgagacgggctcgggcaagaccacccagttgccgaagatctgcctggcgctcggc
cgcggcctcggcgcgggcggcgcgggcctgatcggccacacgcagccgcgccggctcgcg
gcgtcgtcgacgggccgccggatcgccgaggagctcggcacgccgttcggcgaggtggtc
ggctacaaggtgcgcttcaccgacaacctcgccccgggcgcctcggtcaagctgatgacg
gacgggatcctgctcgccgagacgcagaccgacccgctgctgaaggcgtacgacaccctc
atcatcgacgaggcgcacgagcgcagcctgaacatcgatttcctgctcggctacctccgg
cagatcctgccgaggcggccggacctgaagctgatcgtcacgtcggcgacgatcgacgcc
gagcgcttcgcgcgccatttcggcagcgacgagcggcccgcgccggtgatcgaggtgagc
gggcggctgtatccggtcgaggtgcgctaccggccgatcgccgatgaccggccggccgcc
gtccggcacgcggaaggcgggagctcgggccgcgatcgcgcgaagagcgcgcgcgaggcc
gagcgcgacctgatggacggcatcgtcgacgcggtcgacgagctgtgccgcgagggcccc
ggcgacgtgctcgtgttcctgcccggcgagcgcgagatccgcgacgcggccgaggcgctg
cgcaagcaccatccgccgcacaccgagatcctgccgctgttcgcgcggctgtccgcggcc
gagcaggagcgcgtgttcaaggcgtcgaacgcgcggcggatcgtgctcgcgacgaacgtc
gccgaaacgtcgctgaccgtgccgggcatccgctatgtcgtcgacacgggcttggcgcgc
gtgaagcgctattcgtaccggaacaaggtcgagcagttgcagatcgagccgatctcgcag
gcggccgcgaaccagcgcgcgggccgctgcggccgcgtcgccgacggcatctgcatccgc
ctctacgaggaaagcgatttcgccggccgcgcacgcttcaccgatccggaaatcctgcgc
tcgtcgctcgcgtcggtgatcctgcggatgaaatcgctgcatctgtcggcgatcgaatcg
tttccgttcatcgagccgccgccgggccgcgcgatcgcggacggctatcagctgctcaac
gagctcggcgcggtcgacgacgagaacgcgctcacgccgctcggccgcgagctcgcgcgg
ctgccgctcgatccgcgcgtcggccggatgatcctcgccgcgcgcgaccagcaggcgctg
cgcgaagtgctcgtgatcgcgagcgcgctgtccgtgcaggacccgcgcgagcgcccggtc
gacgcgcaggagcaggccgaccaggcgcaccggcgcttcgccgacgagcgctccgagttc
cttcagtggctgcggatctgggcgtggttcgaggaggcggtcgcgcacaagaagtcgaac
cggcaactcgtcgacgcgtgccggcagcatttcctgtcgcacctgcggctgcgcgaatgg
cgcgatgtccactcgcagctcctgaccgtcgtgcgcgagcacggctggcggctgaacgaa
gccgatgcgacgttcgagcagatccatctgtcgctgttgacgggcctgctcggcaacatc
ggcttcaaggccgaggacgagccgcactacctcggcgcgcgcggcatcaagttccatctg
tggccgggctccgcgctcgtgaagaaggcggggcgctgggtgatggcggccgagctcgtc
gagacgagccgcctctatgcgcgctgcatcgcgaagatcgagcccgaatggatcgagcgg
atcggcgcgcatctgctgaagaaatcgctgtccgagccgcactgggagaagcggcccgcg
caggtcgccgcgttcgagcgcgcgacgctgtacgggctcaccatctatcaccggcggcgc
gtcgcgttcggccggcaggacccggcgcgcgcgcgcgagctgttcatccgcggcgcgctc
gtcgacggcgaattcgacacgaagctcgcgttcttcgcgcacaaccgcaagctgctcgcc
gacatcgagcagctcgagcacaaatcgcgccgccaggacgtgctcgtcgacgacgagctg
attcacgcgttctacgatcaggcgattccggccggcattcacacgggcgccgcgttcgag
cgctggtatcgcgacgaggtgagcaagagcgggcagccggaagacaagctgcgcctgctg
tatctgtcgcgcgacgatctgatgcgccacgaggcggcgggcgtgacgaccgagctgttt
ccgaagcgcgtgacgatggcgggcgtcgagatggcgctcgcgtaccacttcgagccgggc
tcgccgcgcgacggcgtgacgctcgcggtgccgctcttcgcgctgaaccaggtcgacgcg
cgccgcgccgaatggctcgtgcccggcatgctcaaggagaaggcgcatctgctgctgaaa
tcgctgccgcagaagctgcgccgccattgcgtgccgctgccggagtacgcggcgggcttc
gtcgagcgcgccgggcgcgagcgcttcggcgcgggcggcctcgtcgacgcgctgatcgcc
gacgttcgcgagcagacgcaggtcgcgacgaaaacgtccgatttcaagctggagacgctg
cccgcgcacctgttcatgaacttcaaggtgatcgacgagcacggccggcaactcgcgatg
gggcgcaatctcgcgcaactgcgcgcggaactgggcgcgcaggcgcagcagcacttccag
aagatcgccgccgcggcgacgctcgcgccggcgggcgagcccgccgcggcggccgccggc
gcgagcggcgcgcgggcacggcgcgtgccgctcggcgcgccgccgcgggcggccgagccg
gcggcgcaagcgggcgcggccgccggcgcgaccgcgctctacgagaacctgacgacgtgg
aacttcggcaagctgccggaactcctcgaaatccgccggcgcggcgagacgctgttcggc
tacccggcgctcgtcgatcgcggcacgcattgcgacgtcgaggtgttcgattcgcccgac
gaggcggcgcggatccaccgcgcgggcctgcggcgcctgttcgcgctgcaactgaaggag
ccgatcaagtatctggagaagaacctgccggggctgcgcgagatggcgatacagtacatg
tcgctcggcacgcaggacgagctgcgcgaccagctgatcgcgaccgcgctcgaccgcgcg
tgcctgcaggaaccgctgcccgccgacgacgcgagcttccacgcgcgccgcgacgagggc
aggagccgcctgaatctgctcgcgcaggagatcgcgcggctcgtcgggcagatcctcgcc
gagtacgcggggctcgcgaagaagctcgcgcaggccaagccgttcccggccgcgcacgcg
gacatgcagggccagctcgccgcgctcgtcggcaagcgcttcgtcgtcgatacgccttac
gcgcagcttgcgcacttcccgcgctacctgaagggaatcgcgctgcgcatcgacaagctg
aaggccgatcccgcgcgcgacgcgcggcaggcggccgagctgcagccgctcgcgcagcat
tatcagcgctcggttgcgcagcgcggcggcgtcgcggacgcgcggctcgccgaattccgc
tggctgctcgaggagctgcggatctcgcttttcgcgcaggagctgcgcacgccgatgccg
gtatcggtcaagcggctctacaaagtgtgggagtcgatgcagcgctga
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