Halobacteriovorax marinus: BMS_0424
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Entry
BMS_0424 CDS
T01659
Name
(GenBank) putative RNA helicase dead-box protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bmx
Halobacteriovorax marinus
Pathway
bmx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bmx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BMS_0424
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bmx03019
]
BMS_0424
03009 Ribosome biogenesis [BR:
bmx03009
]
BMS_0424
Enzymes [BR:
bmx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BMS_0424
Messenger RNA biogenesis [BR:
bmx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BMS_0424
Ribosome biogenesis [BR:
bmx03009
]
Prokaryotic type
rRNA helicases
BMS_0424
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
Motif
Other DBs
NCBI-ProteinID:
CBW25341
UniProt:
E1X401
LinkDB
All DBs
Position
443605..445380
Genome browser
AA seq
591 aa
AA seq
DB search
MNFSDLTLPESLLRALEDKGYKSPTDIQEKAIPLLLEKDTDFVGQAQTGTGKTAAFSLPL
LAKIDSKSGDVQAIVLSPTRELANQITEEMKSFCKYEKIKILSVYGGVPLDGQIRTLKKG
RPQVVVGTPGRVLDLIKRGVLKLENAKLAVLDEADEMLDMGFIDDVKTILSELGDKKKTW
MYSATMPKAILSLIKSYLNEPEVIKIEKKTLSNEDIEQKYFLIKRGNLGEAVCRILDSLT
DYYGIVFCRTKIDAKKLSDEFNYRGFPSDALHGDMSQTQRDLTMRAFKKKKVKLLVCTDV
AARGIDVDNLTHVINYGLPQDLESYVHRIGRTGRAGQKGCAYTVIDSSEKFRIRMLERLM
NTKIELGTLPSIDEIKKALVKNEVSKLEFVAEKLESSENLDSSFSIFKESLEEMEKEALL
KVMFNYMFKKNMDRYSQKSSIELSKGSERGDRNSRNNSDRRERPERSGRGRGDNGYARFY
VGVGKKHGVDLKEFLSSVSGATGVAERDIRRVDLKDQFSFFEVSEKYKEKVLLVAKVSAA
GHTGTLEPTKSGPSTSRRDSRGGGPRRSSNGNRKSFRTSGKERSQRSFRNS
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
atgaatttttctgacttaactctgccagagtcgttgcttcgtgcgctcgaagacaaaggt
tacaaatctccaactgacattcaagagaaggcaatccctcttctattagagaaagatact
gactttgttggacaggcccaaacaggtacggggaaaacagctgctttttctcttccgctt
ttagcgaaaattgattcaaagagtggagatgtacaagcaatcgtacttagtcctacaaga
gagctagcaaatcaaattactgaagaaatgaaatcattttgtaagtatgagaaaattaaa
atcttatctgtatacggtggtgtacctcttgatggacaaatcagaactcttaaaaaagga
agaccacaagttgttgttggtacacctggacgagttcttgacctaattaaaagaggtgta
ttaaagcttgaaaatgcaaaacttgcggttcttgatgaagccgatgaaatgcttgatatg
ggtttcattgatgatgttaagacaatcctttctgagctaggtgataagaagaagacttgg
atgtattcggcaacaatgccaaaagcaatcttaagtcttattaaatcatacttaaatgaa
ccagaagttattaagatcgaaaagaagactcttagtaacgaagatattgagcagaagtac
ttcttaattaaaagaggtaacttaggtgaagcagtttgtagaatcttagattctcttact
gattactacggaattgttttctgtagaacaaagattgatgcgaagaagttatcagatgag
ttcaattatagaggtttcccttcagatgctcttcacggtgatatgtctcaaactcaaaga
gatttaacgatgagagctttcaaaaagaagaaagtaaagttactcgtttgtactgacgtt
gccgctagaggaattgatgttgataacttaactcacgttataaactatggtcttccacaa
gacttagaatcttatgtgcatagaattggtagaactggacgtgcaggtcaaaagggttgt
gcttatactgtaattgatagctctgagaaattcagaatcagaatgcttgagagactaatg
aatacaaaaattgagctaggaactcttccttcaattgatgaaatcaagaaggccctagtt
aaaaatgaagtttctaagcttgagtttgttgcagaaaagttagagtcttctgaaaacctt
gattcaagtttttcaatctttaaagaatctctagaagaaatggaaaaagaagcacttctt
aaagttatgtttaactatatgtttaagaagaatatggatagatactctcaaaaatcttca
attgaactttctaagggaagtgaaagaggagatagaaactctaggaataactctgataga
agagagagacctgagagaagtggaagagggcgtggagataatggttatgcaagattctat
gttggtgttggaaagaagcacggtgtagatcttaaagaattcttatcatcagtttctgga
gctacaggggttgcggagagagacattagaagagttgatttaaaggatcaattctctttc
ttcgaagtttctgaaaagtataaagaaaaagtactcttagttgcaaaagtatcagcagct
gggcatacgggaactttagagcctacgaagagtggtccatctacttcaagaagagattct
cgtggtggaggtccaagaagatcttcaaatggtaatagaaaatcatttagaacttctggg
aaagaaagatctcaaaggtcatttagaaattcataa
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