Halobacteriovorax marinus: BMS_0626
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Entry
BMS_0626 CDS
T01659
Symbol
rho
Name
(GenBank) putative transcription termination factor rho
KO
K03628
transcription termination factor Rho
Organism
bmx
Halobacteriovorax marinus
Pathway
bmx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bmx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BMS_0626 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bmx03021
]
BMS_0626 (rho)
03019 Messenger RNA biogenesis [BR:
bmx03019
]
BMS_0626 (rho)
Transcription machinery [BR:
bmx03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
BMS_0626 (rho)
Messenger RNA biogenesis [BR:
bmx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
BMS_0626 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
AAA_22
OB_RNB
AAA
AAA_24
S1CSD-TOTE-2
Spore_III_AA
ATPase_2
Motif
Other DBs
NCBI-ProteinID:
CBW25533
UniProt:
E1X561
LinkDB
All DBs
Position
642755..644002
Genome browser
AA seq
415 aa
AA seq
DB search
MHLNDLREKEIKELIKMGEKLKVENASGMKTHELIFALLKTSAKNKEDIFGSGVLEILPD
GFGFLRSPGYNYLPGADDIYVSPSQIRRFGLRKGDSLEGQIRPPKDNERYFALLKVQTIN
GQTPEAHKKTVLFDNLTPLYPDKQINLESKPTNYSTRMINLFVPQGFGQRCLIVAPPKAG
KTMLLQEVANSITDNHPDAKLIVLLIDERPEEVTDMKRNVQAEVVSSTFDEPANRHVQVA
EMVLEKAKRLTEAGDDVVILLDSITRLARAYNTVVPPSGKILSGGVDSNALHRPKRFFGA
ARNIENGGSLTIIATALVDTGSRMDEVIFEEFKGTGNSEIQLDRKLLEKRIFPALDINKS
STRKEDLLMDPLDLQRTYVLRKVLHPMSTIDAMEFMLQRVTKTKTNAEFLESMNS
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atgcaccttaatgacctaagagaaaaggaaattaaagaactcattaagatgggtgaaaag
ttaaaagtagaaaatgcgtcggggatgaaaactcacgaattaattttcgctcttctaaaa
acatcagctaaaaataaagaagatatttttggttcaggtgttctagagatccttccagat
ggttttggtttcctaagatctcctggttataactaccttcctggtgccgatgatatttat
gtatctccaagtcaaattagaagatttggtcttagaaaaggtgactcattagagggacag
ataagacctccaaaagataatgaaagatactttgctctattaaaagttcaaacaattaat
ggtcaaacaccagaagcacataagaaaacagtactctttgataacctaactccactgtac
cctgataagcagattaacttagagtcaaagccaactaattactctacaagaatgattaat
ctatttgttcctcaaggttttggacaaagatgtctaatcgttgcaccacctaaggccggt
aagacaatgctacttcaggaagtggccaactcaattactgataatcatccagatgcgaaa
ttaattgttcttctaatcgatgaaagaccggaagaagtaacagatatgaagagaaacgtt
caagctgaagttgtttcaagtacgtttgatgagcctgcaaatagacacgttcaagttgct
gaaatggttttagagaaagcgaagcgtttaactgaagcaggtgatgacgttgttattcta
ttagattcaattactcgtcttgctcgtgcatataacacagttgttccaccttctggtaaa
atcttatctggtggtgttgattcaaatgcacttcacagaccaaagagattctttggagct
gcaagaaatattgaaaatggtggatcattaacaattattgcaacagctcttgtagatact
ggttcaagaatggatgaagttatctttgaagaattcaaaggtacaggtaactcagaaatt
caacttgatagaaaacttttagagaagagaattttccctgctctagatattaataagtca
tcaactcgtaaagaagacctcttaatggatccactcgatctacaaagaacttatgtttta
agaaaggttcttcacccaatgtctacgattgatgcgatggagtttatgctccaaagagtt
actaagactaagacgaatgcagagttcttagaatcaatgaactcttaa
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