Halobacteriovorax marinus: BMS_1508
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Entry
BMS_1508 CDS
T01659
Symbol
pnpA
Name
(GenBank) putative polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
bmx
Halobacteriovorax marinus
Pathway
bmx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bmx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BMS_1508 (pnpA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bmx03019
]
BMS_1508 (pnpA)
03016 Transfer RNA biogenesis [BR:
bmx03016
]
BMS_1508 (pnpA)
Enzymes [BR:
bmx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
BMS_1508 (pnpA)
Messenger RNA biogenesis [BR:
bmx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
BMS_1508 (pnpA)
Transfer RNA biogenesis [BR:
bmx03016
]
Prokaryotic type
tRNA degradation factors
BMS_1508 (pnpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
S1_RRP5
PNPase
OB_RRP5_4th
KH_2
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
CBW26365
UniProt:
E1X0D7
LinkDB
All DBs
Position
1487881..1490010
Genome browser
AA seq
709 aa
AA seq
DB search
MLNDKKVYSLNYGGKEVTVETGRLAKQADGSVLVSCNGTQVLVTVCSAHEVKDGQDFFPL
LVEYTEKFYSAGKFVGGFLKREGRPSTSETLNARLIDRPLRPLFPEGYMFDTVVSCNVLS
YSDEGDAEVLAGLGASAALTISDIPFNGPIGTCKVGRVDGKLVLNPSHSQWAESDLEIAV
AASADAILMVEGEAKVVPEKEVLEAIYFGHDNIKEYVKLMEQMRSEIGRPKREFVSAAAN
ETMMSKMRSDFASGARNCISIDDKMDRQRAVKALEKEVKNAMSEAPEAFGLTADDSFGKE
AYKGVDELLYEMMRGDILNEEKRIAGRGMTEVREIETEANLLEHVHGSSLFTRGETQVMA
AVTIGGKHGEKMEDSIRGTEFQKFYLHYNFPPFSVGEARGVRGVGRRELGHGNLAERAVK
AVMPSEEEFAYTTRVVCEVMESNGSSSMGSVCSASMALMDAGVPISNPVAGIAMGLITDG
ERFKVLTDILGDEDHLGDMDFKVAGTVDGITAIQMDIKITGLTREIVEKSIEQAREGRLH
ILGEMAKTISTKRAEFKDGVPRIVTVQIPVDKIGALIGPGGKNIKKLQEDFDVTVEITEE
GLVKVLGTDTDILNNCVASIDLQINGPEVGSIYEAVVVTIKEYGAFVDIIPGVSGLVHVS
ELSDERVKDVSEYLSEGDKVSVKVVEVDRMGRLKLSAKAVKPVEKKADK
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atgttaaacgataagaaagtttattcgttgaactatggtggcaaagaagtcactgttgaa
acgggtcgtcttgctaaacaagctgacggttcagttctagtatcatgtaatggaactcaa
gttcttgttacagtttgttctgctcacgaagtaaaagatgggcaagatttcttcccacta
cttgttgagtacactgagaagttttactctgcaggtaagtttgtaggtggattcttaaag
agagaaggtcgtccttcaacttctgaaacattaaacgcaagactaattgatagacctctt
agacctctattcccagaagggtatatgtttgacactgttgtttcatgtaacgttctttca
tactctgatgaaggtgatgctgaagttctagcaggtttaggtgcttctgctgcattaact
atttctgatattccattcaatggtccaatcggtacatgtaaagttggtagagtagatgga
aagcttgttcttaacccatctcactctcagtgggcagagtctgatcttgagatcgctgta
gctgcttccgctgatgccattcttatggttgaaggtgaagcgaaggtcgttcctgagaaa
gaagttcttgaagcgatttactttggtcacgacaatatcaaagaatacgttaagctcatg
gagcaaatgagaagtgaaattggtagaccaaagagagagtttgtctcagcggcagctaat
gaaacaatgatgagtaaaatgagaagtgacttcgctagtggagcgagaaactgtatttct
atcgatgataaaatggatagacaaagagctgttaaggcacttgagaaagaagttaagaat
gcaatgagcgaagcgcctgaggccttcggacttactgctgatgatagctttggaaaagaa
gcatacaaaggtgtagatgagcttctctatgaaatgatgagaggagatattctaaacgaa
gaaaagcgtattgctggaagaggaatgactgaagttagagagatcgaaactgaagcaaac
ctacttgagcacgtacacggttcttcacttttcactagaggtgaaactcaggttatggcc
gctgtaacaatcggtggtaagcacggtgagaagatggaagattctatcagaggaactgag
ttccaaaaattctacttacactataatttccctccattctctgttggtgaggcgagaggt
gtaagaggtgtaggacgtcgtgaacttggtcacggtaaccttgctgaaagagctgttaag
gcagttatgccatctgaagaagaatttgcttatacaacaagagtcgtatgtgaagttatg
gagtctaatggttcttcttcaatgggatctgtttgttctgcttcaatggcactaatggat
gctggtgttcctatttctaatccagttgcaggtattgcgatggggctaattactgacggt
gagagatttaaagttctaactgatatccttggtgacgaagatcaccttggtgatatggac
tttaaagttgcaggtacagttgacggtatcactgcaattcaaatggatattaagattaca
ggtcttactcgtgagatcgttgaaaaatctattgagcaagctagagaaggtagacttcat
attctaggtgagatggcgaagacaatctcaactaagagagctgagttcaaagatggtgta
ccaagaattgttactgttcaaatcccagttgataagatcggtgctcttattggtccaggt
ggtaagaatattaagaaacttcaagaagactttgatgttactgtggaaattacagaagaa
ggacttgttaaagttcttggaactgacactgatatcctcaataactgtgtagcttcaatc
gatcttcaaatcaatggtccagaagtaggatctatttacgaagctgttgttgttacaatc
aaagagtacggtgcattcgtagatattatccctggtgtttctggtcttgttcacgtttct
gagctttctgatgaaagagttaaagacgtaagcgagtacctaagtgaaggtgataaggtt
tcagtaaaagttgttgaagttgatagaatgggaagactcaagctatctgccaaagctgtg
aagccagtagagaagaaagctgataaataa
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