Halobacteriovorax marinus: BMS_2518
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Entry
BMS_2518 CDS
T01659
Symbol
dnaE
Name
(GenBank) DNA polymerase III alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
bmx
Halobacteriovorax marinus
Pathway
bmx03030
DNA replication
bmx03430
Mismatch repair
bmx03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bmx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BMS_2518 (dnaE)
03430 Mismatch repair
BMS_2518 (dnaE)
03440 Homologous recombination
BMS_2518 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bmx03032
]
BMS_2518 (dnaE)
03400 DNA repair and recombination proteins [BR:
bmx03400
]
BMS_2518 (dnaE)
Enzymes [BR:
bmx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
BMS_2518 (dnaE)
DNA replication proteins [BR:
bmx03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
BMS_2518 (dnaE)
DNA repair and recombination proteins [BR:
bmx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
BMS_2518 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
HROB
MglA_C
POTRA_2
Motif
Other DBs
NCBI-ProteinID:
CBW27308
UniProt:
E1X5I7
LinkDB
All DBs
Position
complement(2522312..2525959)
Genome browser
AA seq
1215 aa
AA seq
DB search
MYHEAFNMSENESSSLLETHPNSFVHLHLHTQYSLLDGAIRLKDLIPAAKEMGVPAIAQT
DHGNMFGAIDFYKRCKSAGIKPILGSEIYFTPGSRFDRKSARRSARVSNQDEEESNHHIH
HLILLAKNNIGYQNLCKLLSRAYLEGFYYKPRADIELLKEYSEGLICTTACLKGEVGYNF
FTGQDEKAVRAIEKLQEVFGYEDFYLEIQENGIPEQADVNRKVLEYAKEKKVKVVATNDA
HYMTPEDATAQEVLLCIQTGKSFADENRMKMTSQEFYYKSPEKMREQFHYAPEACDATLE
IADKCNVELNWTDEQGNQIYHLPDYPIDTGETEDDYFRRMCKEGLEERFRGPHFTKLVSE
DNWKAELEPKYWERLKYEVDMIIEMGFPGYFLIVADFIQWSKNNGIPVGPGRGSGAGSLA
AYAMTITNIDPLPYNLLFERFINPERISMPDFDVDFCQAGRQRVIEYVTEKYGEEKVGQI
ITFGKLQAKAVVKDVSRVFDLSFAEANMLSKLIPDELGINLEKAIEMEPKIQELIDTDSK
IRQIFTISRRLEGLYRHAGIHAAGVIITSKPLVEYCPLFKGAKGEKVVQFDKDFSEEIGL
VKFDFLGLKTLTVIDYASKFVQRDHVKDFDIEEIDYEDKKVYDFIGDGNTIGVFQLESSG
MIDLCKRIMPDSIDDITAINALYRPGPMGSGMHDQFVEIKHGRQKEHYAFEELRPLLKDT
YGIIVYQEQVMNIARVLAGYTLGQADILRKAMGKKKIALIEEHREIFLKGAAERGFDVEK
AGELYQLMASFAEYGFNKSHAVAYSYISFQTAFLKYYYPACFFAGLLSTELSNTDKVTVY
INDAKNHGVEVLPPDVNESLWLFNVIGQNIRFGMGAIKNVGENAVEELVREREENGPFKG
FIDFCTRVSLKIVNNRVIESLIKVGAFDECETKLNRKTMLENAELIVTYAKKLQHEKELG
QVSLFDMGGSSSDDDGSNDPMKMLDIQITNDFDDREKLAYEAQLMGIYVSGHPLDRYSDI
MGKLASMDIAAARDLTGGDKREMMLAGLISEKRDIMTKKGDRMCFAQLEDLSGKIECIVF
PKVFAEFGELLSGDEPVLMSGNVNLAEEPRKFFPTNVKLLKDQAEDRVTSIRINVKMEEL
TETKLDRFKQVLLSYRGSVPAHVIFSANDGRARLPLGEDFLVNPTPQMAARVNELFNGNS
VQFIVDGRVEDPAMQ
NT seq
3648 nt
NT seq
+upstream
nt +downstream
nt
atgtatcacgaggcattcaatatgagtgaaaacgaatcttcatcgcttctagagacacat
ccaaatagctttgttcatcttcatttgcacacccagtactcgctactcgacggtgctata
agattgaaggatttaattcctgcggctaaggagatgggtgttccagcgatagctcaaacc
gatcatggaaatatgtttggagctattgatttttataagcgttgtaagtctgcgggaatc
aaaccgatcctaggttctgaaatttatttcacgcctggttcgagatttgaccgaaagtct
gcaagaagatctgcccgtgtatcaaaccaagatgaagaagagtctaatcaccacattcat
caccttattctcttggcaaagaataatataggttatcaaaatttatgtaagctactttca
agggcctaccttgaaggtttctattataagcctcgcgctgatattgaactattgaaagaa
tactctgaaggtcttatttgtacgactgcttgcttgaaaggtgaagttggctacaacttc
tttactgggcaagatgagaaggccgtgcgtgcgattgaaaagctgcaagaagtatttggt
tatgaagacttctacttagagattcaggaaaacggaatcccagagcaagctgatgtaaac
cgtaaggttttagagtacgctaaggaaaagaaagtaaaagttgtggccactaatgatgcc
cactatatgactccggaagacgctacagcgcaagaagttttactctgtattcagacggga
aaatcttttgccgatgaaaatagaatgaagatgacttcacaggagttctactacaagtca
ccagagaaaatgcgtgagcaatttcactatgcacctgaagcatgtgatgcaactttagag
attgctgataaatgtaatgttgagctgaactggacagatgaacaaggtaatcaaatttat
caccttcctgactatccgattgatacgggtgagacggaagacgattactttagaagaatg
tgtaaggaaggccttgaagaaagatttagaggaccgcactttaccaaattagtgagtgaa
gataattggaaggctgagcttgaaccaaagtattgggagagattaaagtacgaagtcgat
atgattatcgagatgggatttcctggttactttctcatcgttgcggactttattcagtgg
tcaaagaataatggaattccagttgggccaggtcgaggttccggtgcaggatctctagcg
gcctacgctatgactattacaaatattgaccctcttccatacaatcttctatttgaaaga
tttatcaaccctgaacgtatctctatgcctgactttgacgttgacttctgtcaggcaggt
cgccaaagagtgattgagtatgtaacagagaaatacggtgaagagaaagttggtcagatt
attacctttggtaagttacaggccaaggccgtagttaaagacgtctcacgcgtttttgac
ctctctttcgccgaagcaaatatgttatcaaagcttattcctgatgaacttggaatcaat
cttgagaaggccattgagatggagcctaagattcaagagctgattgatacagactcaaag
attagacagatctttacaatctctagaagacttgagggtctttaccgccacgcagggatt
cacgctgcaggtgttatcattaccagtaaaccacttgttgaatattgtcctttatttaaa
ggggcgaagggcgagaaggttgttcaatttgataaagacttctcagaagaaattggtctg
gttaagtttgacttcttagggctaaaaacacttacagttattgattacgcttcaaagttt
gttcaaagagatcatgttaaagattttgatattgaagaaattgattacgaagataagaaa
gtttatgacttcattggagacggtaatacgattggtgtcttccaattagaatcatctggg
atgattgatctctgtaagagaattatgccagatagtattgatgatattaccgccattaac
gctctctatagaccggggccaatgggttctgggatgcacgatcaattcgtggagattaag
cacggtagacaaaaagagcattacgcgtttgaagagttaagacctcttttaaaagatact
tacggcattattgtttatcaagaacaggttatgaatattgcccgagtgctggccggatat
actcttggtcaagcggatattttaagaaaggcgatggggaagaagaagattgccttgatt
gaagagcatagggagatctttttaaagggtgcagctgaaagaggttttgacgtagaaaaa
gcgggagagctctatcaactgatggccagctttgcggaatatggtttcaataaatctcac
gccgttgcttattcatatatctcatttcaaactgcatttttaaaatactattatccagcg
tgcttctttgcaggacttctttctacagaattatcaaatacggataaagttacagtttat
attaacgacgctaaaaaccatggagtcgaggttctacctccagacgtaaatgaatcgctt
tggctcttcaatgttattggacagaatatacgttttggaatgggtgccattaagaacgtt
ggtgaaaacgctgtagaagaacttgttcgagagagagaagagaacggacctttcaaaggg
tttattgatttctgtactcgtgtctctcttaagatcgtgaacaatagagttatagagtct
ctgattaaagttggtgcatttgatgagtgcgaaacaaagcttaaccgtaagaccatgctt
gaaaatgctgaactcattgtgacttatgctaagaaacttcaacatgaaaaagagcttggt
caagtaagtctctttgatatgggtggttcctctagtgatgatgacgggtcaaatgatccg
atgaagatgctcgatattcaaattacaaatgactttgatgatagagagaagcttgcttat
gaagctcagttgatggggatttatgtctctggtcatcctctagatcgatatagcgatatt
atggggaaattggcctctatggatattgctgccgctagagatttaactggtggagataag
agagagatgatgctcgcaggtctaatatctgagaagagagatattatgacgaagaagggt
gatcgtatgtgctttgctcagcttgaagatctctcgggtaagattgaatgtattgtattt
cctaaggtttttgccgagtttggggagcttctttctggagacgagccggttctgatgagt
ggaaatgttaatttggccgaggagccgaggaagtttttccctactaacgtgaaattattg
aaagatcaggccgaggacagggttacttcaattcgaattaatgttaaaatggaggagcta
acggagacgaaacttgatcgttttaagcaagtactccttagttatagaggaagcgttcct
gcgcatgttatttttagtgcgaacgatggaagagctagactgcccctcggtgaggacttt
ctagtgaacccaacaccgcagatggcagcgagagtgaacgaattatttaatggaaattca
gttcagtttattgttgatgggagagttgaagatccggccatgcaataa
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