Brugia malayi (filaria): BM_BM3579
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Entry
BM_BM3579 CDS
T01050
Symbol
Bma-symk-1
Name
(RefSeq) Uncharacterized protein
KO
K06100
symplekin
Organism
bmy
Brugia malayi (filaria)
Pathway
bmy03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bmy00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
BM_BM3579 (Bma-symk-1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bmy03021
]
BM_BM3579 (Bma-symk-1)
03019 Messenger RNA biogenesis [BR:
bmy03019
]
BM_BM3579 (Bma-symk-1)
Transcription machinery [BR:
bmy03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
BM_BM3579 (Bma-symk-1)
Messenger RNA biogenesis [BR:
bmy03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
BM_BM3579 (Bma-symk-1)
U7-dependent histone pre-mRNA processing factors
BM_BM3579 (Bma-symk-1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SYMPK_PTA1_N
Symplekin_C
Motif
Other DBs
NCBI-GeneID:
6104963
NCBI-ProteinID:
XP_042938069
LinkDB
All DBs
Position
Unknown
AA seq
1106 aa
AA seq
DB search
MTDSENTSEEIGNEIREAHQSSGKSVDIRIKHLYRAQELLLHRDKSNSLLDNFLDEMLEF
VVENDSKMRCFVASFIEKACKKDCEVMKKAVVSLSYLIQAAGLGMVAVIKKVITVCSQLY
PFILKWAAGSRSAEIARCWEAFSVLKGRIMQHIDSDNEGIRTQTIRFLEAVILAQTLRTE
ESEKGRGDNMCLNEIGRDHRFISYRKMESEATLNFNSLLDHISSAHISSLNLLTCLTCIC
NIAQQRPQFMQRVVGALESLHVNLPPTLATSQVKSVRKELKMHLLRLLRHSSSVPFHPRI
MTLLTDLGAAQSEVLRALPSASEQRKKSHRHNESSDEPETKRMKGIGETPAVAEKEDDEE
YEDEAGPSIPIEKSQTQFAVDITAQFVYERLKPKLVTNLVLTSLVTLPDEMPAAFQSSYT
PIAAAGTESQIRHLSRMIATQLTNMELGPGIEKIRAENQQYIARQAAKMEGAVIPSAPLH
QFPSVQQNQAQQSESALSAKTRPKIQFGLLSITKELDREQSLKLILLAFQRILANEKRAI
QGGVGVAQQKLLIRLVTRLDHDSCDDFENLLMMFIVQEQKSRTELALLWIAELYAQYQGY
SVCRTSYATDGYHNESQRYKRYDAVLCNLLRTLYERGEHKETLFHKILLEAPLLTPQSLV
WLRTACLDSVFGAFGMTTLRELILTRARQRNELLCILLDFSYNDRADVRTQSVETAKELY
QIDYVRGDVREYLVSSINYCTRPIPPAQLNTYEKESTKSDWDDASIRITLNLFLSILPLD
HSLIHTLAAVYAKSSNDIKRVTLRTIDSAIKSMGATSEHLLEMIENCPQGAETFAARIVH
LLTERNPPTQDLVNRITALYEQGRTDVRSMIPVLSGLDKDQILSILPKFVLTPVNQKSVP
IVFNKLLAGRSIKTGLHPMGAGELLVALHKICAENKEENDLLLQNIDVLLTQLTATKDAI
GSAIDQLCDDGIFSETLFYTVTRSHKIFPALGGFISNVLVKIANKKPWKNDPNLWPHFVR
CAVANAPHSYFAILTVLTNHEFDELLQQSRKEGTDVLGSLRDYVPSLSAHQQKKIDHHVR
EIIMEYRPDRSENKENVFKSDMKYHS
NT seq
3321 nt
NT seq
+upstream
nt +downstream
nt
atgacagatagtgaaaatacaagcgaagagattggaaatgaaatacgtgaagcgcatcaa
tcgtccggtaaatcagtggatattcgcatcaagcatctttacagagctcaagaattgcta
ctacatagagataaaagcaattctcttcttgacaattttctcgatgaaatgctcgaattt
gtagtggaaaatgactcgaaaatgcgttgtttcgttgcatcctttattgaaaaagcttgt
aaaaaggattgcgaagtaatgaaaaaggctgttgtctcgctatcatatctcattcaagct
gctggtctgggaatggttgccgttatcaaaaaggtaatcactgtatgttcgcagttatat
ccatttattttaaaatgggcagctggatcacgcagtgctgagattgcacgatgttgggaa
gctttctcagtactgaaaggacgtatcatgcagcacatcgattctgataacgaaggcata
cgcacccaaactattagatttttggaagctgtaatccttgctcaaacactgcgaactgag
gaaagtgaaaaaggtcgtggtgataatatgtgcttaaacgaaattggtcgcgaccatcga
tttatctcatatcgtaaaatggagagtgaagcgacgctaaatttcaattcgttgcttgat
catatttcttcggcacatatatcctcgcttaacttgttaacttgtctaacttgtatctgt
aatatcgctcaacagcgtccgcagtttatgcaaagagttgttggagctctggaatcttta
cacgttaatcttcctccaactttagcaacaagtcaagtgaaaagtgtacgcaaggaatta
aaaatgcatcttctacgccttttgcgacattctagtagcgttccatttcacccaagaata
atgacattattaacagatttaggagctgcgcaatcggaggttttacgcgcattaccttct
gcgagtgaacagcgtaaaaagtctcatcgacataatgagagtagtgacgaaccggaaaca
aagagaatgaaaggtatcggagaaactccggcagttgctgaaaaggaagatgatgaggaa
tacgaagatgaggctggtccaagcataccgatcgaaaaaagtcaaactcagtttgctgtt
gatattactgcccaatttgtatacgaacgattgaaaccaaaattggttacaaacttggtt
cttacatcccttgtaacacttccggacgaaatgcctgcagcattccaatcgtcatatact
cctattgctgcagctggtacggaaagtcagattcggcacttatcacggatgattgcaaca
cagttaactaacatggagttaggtccaggaatcgagaaaattcgggcagaaaaccaacag
tatatcgcacgtcaagccgcaaaaatggaaggtgccgtcatcccatccgctccactgcat
caatttccttctgtgcagcaaaatcaagcgcagcaatctgaatctgcgttgtcagcaaaa
actagaccaaagattcagtttggattgctttctattactaaagaattagatcgagaacaa
tcgctgaaacttattcttcttgcatttcaaaggatattagccaatgaaaaaagagcaatt
caaggcggtgtaggtgttgcacaacagaaattgttgatcaggcttgtaactcgtctcgat
catgattcatgtgatgactttgaaaatctactcatgatgtttattgtacaagaacagaag
tcacgaactgaactggcattattgtggatagcagaactttatgcgcagtatcaagggtat
tccgtatgccggacttcttatgccacagatggatatcacaatgaatctcagcgttacaaa
cgttacgatgcagttttgtgcaatttattaaggacattatatgaacgaggagaacacaaa
gaaactttattccataagatcttactagaagcacctttgctaacaccgcagtctcttgta
tggttacgaactgcttgtcttgattcggtatttggagcatttggaatgacaacattacgt
gaactaattttaactcgagcaagacaacgaaatgaattgttgtgtatacttctagatttt
tcatataatgacagagccgatgtccgtacacaaagtgttgaaacggcgaaagaactatat
cagatcgattacgtcaggggagatgtcagggaatatttagtttcttcaataaattattgc
acaagaccaatcccgcctgcgcaacttaatacctatgaaaaagaaagtaccaaatctgac
tgggatgacgcatcaatacgcattaccttaaacttatttttatccattcttcctcttgac
cattcactgatacatactttggctgctgtttatgcgaaatcttcaaatgatatcaagcgg
gttacactgcgcacaattgatagtgctataaagtcaatgggtgcaacaagtgagcatctt
ttagaaatgattgaaaattgtccacaaggagctgaaacattcgctgctagaatagtacat
cttctcactgaaaggaatcctccaactcaagatcttgtaaataggataactgctctgtat
gaacagggaagaaccgatgttcgctcaatgataccagttttgagtggtctcgataaggat
cagatattgagcattttgcctaagtttgttctcacgccagttaatcaaaaatcagtacct
attgtattcaacaaactcttggctggaaggagtattaaaactggccttcatccaatgggt
gcaggtgaactacttgtggcgctgcacaaaatttgtgctgaaaacaaagaggagaacgat
ttattgttgcagaatattgatgtcttattaacacaactgacggcaacaaaggatgctatt
ggttcagcaattgatcagctttgtgatgatggaatcttctcagaaacattattttatact
gtcacacgttcacataaaatttttcctgctctaggtggctttatttcaaatgtattggtg
aaaattgcgaacaaaaaaccatggaaaaatgatccaaatttatggcctcattttgtacgc
tgtgctgttgcaaatgctccacattcctacttcgcaatactaacagttttaacaaatcat
gaatttgatgagttgttgcaacaatcgcgaaaggaaggtactgatgtgttggggtcatta
cgagattatgttccatcattatcggcacatcagcagaagaaaattgatcatcatgttcga
gaaattattatggaatatcgaccggatagatcggaaaacaaggagaatgtttttaaatct
gatatgaaatatcattcttag
DBGET
integrated database retrieval system
