Bacillus pseudomycoides 219298: DJ92_2644
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Entry
DJ92_2644 CDS
T03239
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bmyc
Bacillus pseudomycoides 219298
Pathway
bmyc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bmyc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DJ92_2644 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bmyc03400
]
DJ92_2644 (mfd)
Enzymes [BR:
bmyc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DJ92_2644 (mfd)
DNA repair and recombination proteins [BR:
bmyc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DJ92_2644 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
UB2H
RecG_dom3_C
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AIK40324
LinkDB
All DBs
Position
2523590..2527120
Genome browser
AA seq
1176 aa
AA seq
DB search
MIGLLEQFYKNKEIQSIINGLEEGLKEQLVSGMATSSRSLLMAALYKKTKQSQLVVTHNL
FQAQKVYEDLVSLLGERDVWLYPVNELIASEIGVASPELKAQRIEVLNRLAMGEQGIIVV
PVAGLRRFLPIKELWKQKQIEISLGQEIDLDVLLHTLHHIGYERKSMVEAPGEFSLRGGI
LDIYPLTEELPFRIELFDTEVDSIRSFDVEEQRSQDKRESVKFGPATEFLFSKDELKLGV
ERLEEGLMKTMQKLSDDKIKTAVLETVSHEIEILKNGQTIEQMFKYLSIFYKEHASLIDY
LPENGVVILDEISRIQETASHLETEEAEWYTSLLSEGAIIQDLVFSHQFEEFLHHKKRSF
VYLTLFLRHIAHTHPQNIVNVTCKTMQDFHGQMQLLKTEIDRWTEGDFTTVVLGTDEERA
KKLQYILSDYDIEADIIESTDILLPGRLQIAVGDLHAGFEMPMQKLVVITEKELFHKKVK
KSQRKQKLSNAERIKSYSELKVDDYVVHVNHGIGKFLGIETLEINGVHKDYLNIKYQGND
KLYVPIEQIDQVQKYVGSEGKNPKVYKLGGNDWKKVKTKVEKSVQDIADDLIKLYAEREA
SKGYAYTPDTAEQQEFESSFPYQETEDQLRSIEEIKKDMERGRPMDRLLCGDVGYGKTEV
AIRAAFKAIMDEKQVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIK
GLKDGTVDIVIGTHRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTAT
PIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPGLIREAIERELARGGQIYFLYN
RVEDIERKADEISMLVPEARVTYAHGKMNESELESVMLSFLDGQHDVLVSTTIIETGVDI
PNVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFT
ELGSGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRQGTQGIENTID
VEIDLEVDAYLPDAYISDSKQKIMMYKQFRGVSAIEDIEELQEEMIDRFGDYPQEVGYLL
QIANIKVLATKEQIELIKQTKFEVTFLFSEQSSQNIDGGKLFMLGNSFGRMIGLGMEGSR
LKIVMKTNGLETSKWLTIAENLLKGLSDVKKEVINA
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgatagggttattagagcaattttataaaaataaagaaatacaatccattattaatgga
ctagaagaaggattgaaagaacagcttgtatcaggtatggcaacttcttctcgttcttta
ttaatggctgctttatataaaaaaacaaagcagtcacaacttgttgttacacacaactta
tttcaagcgcaaaaagtatatgaggatttagtatcactacttggtgagcgggatgtatgg
ttatatccggttaatgaattaattgcgtcagaaataggggttgcaagcccagaactgaaa
gctcagcgtattgaagtattaaatcgtttagcgatgggcgagcagggcattattgttgtt
ccagttgctggattacgtagatttctaccaataaaagaattatggaagcaaaagcaaatc
gaaattagtctagggcaagagattgatttagatgtattgcttcatacattgcatcatatt
ggatatgaacgtaagtcaatggtagaagcacctggagaatttagtttgcgcgggggtata
ctggatatttatccgttaactgaagaattaccgtttcgtatagagctctttgatacggaa
gtagattctatccgctcatttgatgtagaagaacaacgctctcaagataaaagagaaagc
gtgaaattcggtcctgcgacagaatttttattttcaaaagatgaactgaaattaggggtg
gagcgtcttgaggaaggtttaatgaagacgatgcagaagctctctgatgataaaatcaag
acagcagtacttgaaacagttagtcacgagatagaaatattgaaaaacggacagactata
gagcaaatgtttaaatatttatctattttttacaaagaacatgctagtctaatagactat
ttacctgagaatggtgtcgttatcttagatgaaatttcgcgtattcaagaaacggcatca
catcttgagacagaagaagcagaatggtatacatcgcttctaagtgaaggggcaattatt
caagatttggtgttctcacaccaatttgaagaatttctacaccataaaaagagaagcttt
gtatatttaacattatttttacgccatattgcacatacgcacccgcaaaatattgttaat
gtaacgtgtaaaacaatgcaggactttcatgggcaaatgcaattgttaaaaacagaaatt
gatagatggactgaaggggacttcacgactgttgtattaggaacagatgaagaacgcgca
aaaaaattacaatatattttaagtgattatgatattgaagcagacattatagaatctaca
gatatattgcttcctggtcgccttcaaattgctgtaggtgatttacatgcaggatttgaa
atgccaatgcaaaagcttgttgtgattacagaaaaagagctgttccataaaaaagtaaaa
aaatcacaacgtaagcaaaaactatcgaatgcagagcgtattaaaagttattcagagtta
aaagttgacgactatgttgttcatgtaaatcatggtatcggtaaatttttaggaattgaa
acgttagaaattaatggtgtccataaagattatttgaacattaaatatcaaggtaatgat
aagttatatgtgccaatcgaacaaattgatcaagtacaaaagtatgtaggatcagaaggt
aagaatccgaaagtttacaaactaggcggaaacgattggaaaaaggtcaaaacgaaggtg
gaaaaatctgtacaagatattgcagatgacttaattaaattgtatgcagagcgtgaggct
tcaaagggatatgcgtatacgccggacactgcagagcagcaggaatttgaatcatctttc
ccgtaccaggagacagaagatcagttgcgttctattgaagaaattaagaaggatatggaa
cgtgggcgtccgatggatcgacttctatgtggtgatgttggatatggtaaaacggaagtt
gcaattcgtgcagcgtttaaagcaattatggatgaaaagcaagttgcaattttagtaccg
acaacgattcttgcacaacaacactatgaaacgattcgagaacgttttcaagactaccca
attaatattggattgttaagtagattccgtactagaaaacaacaaaatgaaacaattaaa
ggtttaaaagatgggacagttgatattgttattggaacacatcgcattttatctaaagat
gtaacctataaagatttaggcttactaattatcgatgaagaacaaagatttggtgttacg
cataaagaaaagattaaacaattgaaagcgaatgttgatgtattaacattaacggcaacg
ccaattccgcgtacgctccatatgtctatgctcggtgtacgagatttatctgttattgag
acgccaccagaaaatcgtttcccggtacaaacatatgtggttgagtataatccagggtta
attcgagaggcgatagaacgggaacttgcaaggggcggtcaaatttatttcttgtataac
cgtgttgaagatattgaaagaaaagcagatgaaatctccatgttagtcccagaggcgcgt
gtgacgtatgcacatgggaaaatgaacgagagtgaactagagtctgtcatgctatcattt
ttagatgggcagcatgatgttcttgtaagtacaacgattattgaaacaggtgttgatatt
cctaatgtaaatacattaattgtatttgatgccgatcgtatgggattatcacagctttat
cagcttcgtgggcgcgttggtcgttcaaaccgtgttgcttatgcatactttgcatataag
cgtgataaagtgttgtcagaagtcgctgagaagcgtttacaagcaattaaagaattcaca
gaacttggatcaggatttaaaattgcaatgcgagatttatccattcgtggtgctggtaac
ttgttaggggctgagcagcatggattcatcgattctgtcggatttgatctatattctcaa
atgttaaaagatgcgattgaacagcgtcaaggaacacaaggaattgaaaatacgattgat
gttgaaattgatttagaagtggatgcttacttgccagacgcctatatttcagatagtaaa
caaaaaattatgatgtacaaacaatttagaggtgtctctgcgattgaagatattgaggaa
ttacaagaagaaatgattgatcgttttggagattatccgcaagaagttggatatttatta
caaattgcaaatattaaagtattagcaacgaaagaacagattgagctaattaagcaaaca
aaatttgaagtgacgtttttattctcagagcaatcaagccaaaatattgatggtggaaaa
ttatttatgcttggtaatagttttggtcgtatgattggtcttggtatggaaggttctcgt
ttgaaaattgttatgaaaacgaatggattagagacatcaaaatggttaacaatcgccgaa
aatttattaaaaggtttgtctgacgtgaaaaaagaagtaataaatgcctaa
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