Bacillus pseudomycoides 219298: DJ92_3754
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Entry
DJ92_3754 CDS
T03239
Symbol
addB
Name
(GenBank) helicase-exonuclease AddAB, AddB subunit
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
bmyc
Bacillus pseudomycoides 219298
Brite
KEGG Orthology (KO) [BR:
bmyc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bmyc03400
]
DJ92_3754 (addB)
Enzymes [BR:
bmyc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DJ92_3754 (addB)
DNA repair and recombination proteins [BR:
bmyc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
DJ92_3754 (addB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ADDB_N
PDDEXK_1
UvrD_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AIK38552
LinkDB
All DBs
Position
3657839..3661351
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AA seq
1170 aa
AA seq
DB search
MSLRFVIGRAGSGKSTFCLHEVQEELGQRPRGETILYLVPEQMTFQTQQALIGNEGVSAS
IRAQVFSFSRLAWKVLQEVGGASRLHIDEAGVHMLLRKIVEARKEGLYVFQKAAEQNGFF
EHLGSMIAEFKRYNVTPSNVYEMWQQLDAHSSGDEQKLLANKMYDLQLLYDDFERALIGK
YLDSEDYLQLLVEKLPDSDYVKGAEIYIDGFHSFSPGELEIIRQLMICGARITITLTVDE
KTLSQPTSELDLFYQTVLTYEKVKQLAREEKIAVESTISMSEQPRFLSPALAHLEAEFES
RPSKKFQSEPDITLYTAANLRAEVEGVAREIRRLVAEEEYRYRDITVLLRNGESYYDVMK
TLFTDYDIPHFIDEKRPMSHHPLIECIRSALEVISGNWRYDAIFRCIKTELLYPLDVRKE
SMREEMDEFENYCLAYGVQGKRWTADEPWTYRRYRSLDGVNGMQTDSEREMEEKINCLRD
VVRTPIIRLQKRLKRASSVVQMCEAVYLFLEELDVPKKLEDLRMRAEAEGNFLFASDHDQ
VWEEVMNLLDTFVEMLGEEKMSRSMFIDVMTTGLEALQFANIPPSLDQVLIANIDRSRLS
DIRAAFVIGANEGIIPAAPSDEGMLSDEEREFLVTAGVELAPTTRQTLLEEQFVIYQTVT
RASEKLYISCPLADEEGKTLLSSSFIKKVKRMFPSVKEVFVTNDVNDLSRQVQISYVATP
EVTLSYVTQQLQNWKRYGFEGNLDFWWDVYNFYVTSPEWKQKSSRVLSSLFYRNRAQKLS
SVVSRDLYGDKIKGSVSRMELFNRCAYAHFAQHGLSLRERDIFKLDAPDIGELFHAALKK
IADKLLRENRTWADLSIKECEHLSAVVIEEIAPLLQRQILLSSNRNYYLKQKLQQIIFRT
SLILREHAKSSGFVPVDLEVPFGMGGTGSLPPMEFSLPNGVKMEVVGRIDRVDKAEDENG
TFLRIIDYKSSTKALDLTEVYYGLALQMLTYLDVVISNANTWMKKDGTASPAGVLYFHIH
NPIVEMKGDASEEEIEKEILKKFKMKGLVLGDADVVRLMDNKLSTGSSDIISAGLKKDGS
FSARSSIASEQEFTTLQQYVHHTFENIGKDITEGVIDIAPYKMGNKAACTFCNFRSVCQF
DESLEDNQFRTLKDMKDSEAMEKMREEVGE
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcttcgatttgtgattggacgagctggaagtggaaaaagtacattttgtttacat
gaagtgcaagaagaattagggcagcgtccaagaggcgaaacaattttatatcttgtaccg
gaacaaatgacgttccaaacgcagcaagctttaataggtaatgaaggagttagcgcctcc
atcagggcgcaagtctttagtttttcaaggttagcgtggaaggtcttgcaagaagttggt
ggtgcaagccgccttcatattgatgaggctggcgtgcatatgttactacgtaaaattgta
gaagcgcgtaaagaaggattgtatgtgtttcaaaaagcagcagaacaaaatggctttttt
gagcatttaggcagcatgattgccgagtttaaacgttataatgtaacgccatcgaatgta
tatgagatgtggcaacagttagatgctcacagtagcggtgatgaacaaaaattattagca
aataaaatgtacgaccttcagcttttatatgatgattttgaacgggctttaattggtaaa
tatttagattcagaagattatttacagttgcttgtagaaaagcttccggattctgattat
gtaaaaggcgcagaaatttatatagacggatttcattcattttcacctggggaattagag
attattagacagctcatgatttgcggagcaagaataacaattacgttaacagtagatgaa
aaaacattatcgcagccaacaagtgaactagatttgttttatcaaacagtacttacgtat
gaaaaggtaaaacaactggcacgtgaggagaaaatcgcagttgaaagtacaatttcaatg
agcgaacagccacgttttctttcgccagcattggcacatctagaagctgagtttgaatct
cgtccgtctaagaagttccaaagtgaaccagacattacattatatacagcggcaaacttg
cgagcggaagttgaaggtgtagctagggaaattcgcagacttgttgcggaagaggagtat
cgctacagagatattacggttcttcttcgtaatggagaaagctattatgatgtaatgaaa
acattgtttactgattatgatattccgcactttatcgatgaaaagcgcccaatgtcacat
catccattgattgaatgcattcgttctgcactagaagtgattagtgggaattggcgctat
gatgctatttttcgctgtataaaaacggaattattatatccgttggatgtgagaaaagaa
tcaatgcgcgaagaaatggatgagtttgaaaattactgtttagcatatggcgtacaagga
aagagatggacggcagatgagccttggacgtatcgtcgttatcgttcgctagatggagta
aacggaatgcaaacagatagcgaacgtgaaatggaagagaaaataaactgccttcgtgat
gtggtaaggacaccaattattcgtttgcagaagcgtttaaaacgtgcaagttcagttgta
caaatgtgtgaagcggtttatttgtttttagaagaattagatgttcctaaaaaactggaa
gatttgcgtatgcgtgctgaggcagaagggaattttctatttgcaagtgaccatgatcaa
gtttgggaagaagtaatgaatcttcttgatacatttgtagaaatgcttggtgaggaaaag
atgtctcgttcaatgtttatcgatgtaatgacaacgggacttgaggcacttcaatttgca
aatatcccgccttctttagatcaagtgctcattgcgaacattgatcgttcaaggttatcg
gatattcgcgcggcttttgtgattggtgcgaatgaaggaatcattccggcagccccttca
gatgaagggatgttatcggatgaagaaagggaatttctcgttacggctggtgtagaatta
gcaccaacaacaaggcagacgttattagaagagcaatttgttatttatcaaacagtaact
cgtgcatctgagaagttatatatttcttgcccccttgcggatgaagaaggaaagacgcta
ctttcatctagctttattaagaaagtgaaaagaatgtttccttctgttaaagaagtattt
gtaacgaatgatgtgaatgatttatctcgtcaggtacaaatttcgtatgtagcaacgcca
gaggttaccttgtcatatgtaacgcagcaattacaaaattggaaacgatatggttttgaa
gggaaccttgatttttggtgggatgtttacaacttctatgttacatcgcccgagtggaag
caaaaaagtagtcgtgtactatctagtttattttatcgaaaccgtgcgcagaagcttagc
tcagttgtaagtagagatctatacggagataaaattaaaggaagcgtctctcgcatggaa
ttatttaatcgatgcgcatatgctcattttgcgcagcatggattatcgctgagagagcgt
gatattttcaagttagatgcaccggatatcggcgaattattccatgcagcattaaagaaa
attgcagacaagttacttagggaaaatcgtacttgggctgatttatcgataaaagagtgt
gagcatctttctgccgtagtaattgaagaaatcgcaccgttattacaaagacaaatttta
ttaagttctaatcggaattattatttgaaacaaaagttacagcaaatcattttccgtacg
tcacttatccttcgtgaacatgcgaagtccagtggatttgtgccagttgatttagaggtt
ccatttggtatgggcgggacaggctcacttccgccgatggagttttcgttgccaaacggt
gtgaaaatggaagttgttggccggattgaccgtgtagataaagcggaagacgaaaatggt
accttccttcgcattattgattataaatcgagcacaaaagctttagatttaacagaagta
tattatgggttagcacttcaaatgttaacgtatttagacgttgttatttcaaatgcaaat
acgtggatgaaaaaagatggaacggcatcacctgctggcgttttatatttccatattcat
aacccgattgtggagatgaaaggcgacgcttcggaagaagagattgaaaaggaaatttta
aagaaatttaaaatgaaaggtctcgtactaggagatgcggatgttgttcgattgatggat
aacaagctttcaacaggaagttcagacattatttctgcaggtctgaaaaaagatggtagc
tttagtgcgcgttctagtattgcaagtgagcaagaatttacaaccttacagcaatatgta
catcatacatttgaaaacatcgggaaagacattacagaaggtgttattgatatcgcaccg
tataaaatggggaacaaagcagcttgtacattctgtaatttccgttctgtttgtcagttt
gatgaatcacttgaggataatcagttccgcacgttaaaagatatgaaagatagtgaagcg
atggagaaaatgagagaggaggttggcgaatga
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