Bacillus pseudomycoides 219298: DJ92_4132
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Entry
DJ92_4132 CDS
T03239
Name
(GenBank) ATP-dependent DNA helicase, RecQ family protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
bmyc
Bacillus pseudomycoides 219298
Pathway
bmyc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bmyc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DJ92_4132
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bmyc03019
]
DJ92_4132
03400 DNA repair and recombination proteins [BR:
bmyc03400
]
DJ92_4132
Enzymes [BR:
bmyc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DJ92_4132
Messenger RNA biogenesis [BR:
bmyc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DJ92_4132
DNA repair and recombination proteins [BR:
bmyc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
DJ92_4132
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
Rhodanese
Motif
Other DBs
NCBI-ProteinID:
AIK39482
LinkDB
All DBs
Position
4031792..4033339
Genome browser
AA seq
515 aa
AA seq
DB search
MRLEDYLYKWFGYNEFRQGQKDVIVDLLQGKDVVAMLPTGRGKSMCYQLPGLMRDGTVLI
VSPLLSLMEDQVAQLKYIVKDRVIAFNSFRTLTEKKEAIKRLSSYKFVFVSPEMLQTEAI
IRELKKIHISLFVVDEAHCISQWGYDFRTDYKKLDQVIAAIGHPPVLALTATATKEVLQD
IIKSLKLTNVAEHVYSIDRPNIAMEVQFVQTIEEKKEALLTQVTYLQGPGIIYCSSRAWT
ERLTEYLRSKGIADVAFYHGGMEHEERMLIQQQFMNDQLQLVICTSAFGMGVNKPNTRYI
IHFHYPANIASYLQEIGRAGRDGEMSIAILLCSPLDHDLPVSIIEDELPNKQQIQFLFSL
LQEKMFQTKVLPMEDVEEICYNAARFSEQHWRFVRYHLEKMKIIQQKKLIMESLSDEKMK
KLMLEVDGRLRNKYRQLENMKSWLQFKGCRREQMLHQFGYKKEAEVKNCCDYCGISKEDY
KKRRARQSIFDYNWEAELQLLFGMRERRNDGHSKA
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
atgagacttgaggattatctgtataagtggtttggttataacgaatttcgtcaaggacag
aaagatgttattgtggatttgttgcaaggaaaagatgttgtggcgatgcttccaactgga
agaggaaaatcaatgtgctatcaacttccaggtcttatgcgagatggaacagtactgatt
gtttctccattactatccttaatggaagatcaggtagcgcagcttaaatatatagtaaag
gatcgtgtgattgcgtttaatagtttccgtacattaactgagaaaaaagaagcgataaaa
agattatcttcttataaatttgtctttgtctcgcctgaaatgctgcaaactgaagcaata
ataagagaactaaaaaagattcatatttcgctatttgtcgttgatgaagcacattgtatt
tcgcaatggggttacgattttcgaacagactataaaaaattagatcaagttatagcggct
attggacatcctccggtattagcattaacagctactgcaacaaaagaagtattacaagat
attataaaaagtttaaaacttacgaatgtagcagagcatgtgtattcgattgatcgtcca
aatattgcaatggaagtacaatttgtacaaacaatagaagaaaaaaaggaagcgcttctc
acgcaagttacttatttacaaggaccaggaattatttattgttctagcagggcttggacg
gagcgcctgacagaatatttaaggagtaaaggtatagcagatgttgcattttatcatggt
ggaatggaacatgaagagcggatgttaattcagcaacaatttatgaatgatcaactgcag
cttgttatatgtacaagtgcatttggtatgggggtaaacaagccgaatacaagatatatt
attcattttcattatccagcaaatattgcttcttatttacaagaaatcggtagagcggga
agagatggagagatgagtattgcgattctactttgtagtccattggatcatgatctacca
gtttctatcattgaggatgaattaccaaataaacagcaaattcaatttttattttcctta
ctacaagagaagatgttccaaacgaaagtattgccaatggaagatgtggaagaaatttgt
tataatgccgcaaggtttagtgagcagcattggcgttttgtacgttatcatttagaaaag
atgaaaatcatacaacagaagaagctcattatggaatccttgtcagatgagaaaatgaaa
aaattgatgttagaagtggacgggcgtcttcggaataaatataggcaattagaaaatatg
aaatcgtggctccagtttaaagggtgtagacgggaacaaatgctacatcaatttggatat
aagaaggaagctgaggtaaaaaactgctgtgactactgcggtatttccaaagaagattat
aaaaaaagacgagcaagacaatcaattttcgactataattgggaagcggagttacaattg
ctctttggtatgagagaacggaggaatgatggacattcaaaggcgtag
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