Bacillus pseudomycoides 219298: DJ92_5059
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Entry
DJ92_5059 CDS
T03239
Name
(GenBank) hypothetical protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bmyc
Bacillus pseudomycoides 219298
Pathway
bmyc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bmyc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DJ92_5059
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bmyc03019
]
DJ92_5059
03009 Ribosome biogenesis [BR:
bmyc03009
]
DJ92_5059
Enzymes [BR:
bmyc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DJ92_5059
Messenger RNA biogenesis [BR:
bmyc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DJ92_5059
Ribosome biogenesis [BR:
bmyc03009
]
Prokaryotic type
rRNA helicases
DJ92_5059
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AIK40535
LinkDB
All DBs
Position
4945160..4946470
Genome browser
AA seq
436 aa
AA seq
DB search
MICLKNFLELGISETFNHTLRENGIAEATPIQEKAIPVVMAGKDIIGQAKTGTGKTLAFV
LPILEKIDPESSDVQALIVAPTRELALQITTEIEKMLVHQENINVLAIYGGQDVAQQMRK
LKGNTHIVVATPGRLLDHLRRETIVLSNVSMLVLDEADQMLHFGFLYDIEDILEETPESK
QTMLFSATMPKDIKKLAKRYMKEPEMIQIQSAEVTVNNIKQGIIETTDRTKQDALRHVMD
RDQPFLAVIFCRTKRRASKLYDDLKGYGYNCDELHGDLSQGKRERVMKSFRDAKIQYLIA
TDVAARGLDVEGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAPKDEMYLKEIE
KGIGATLQRQELELPVKQNDDASEKKKKQQIKKPKKTGQYGQKDNPGGSKNTKQRSFHKP
SEKKNSKKQGQQRRGR
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
gtgatctgtttgaaaaactttttagaattaggaattagtgagacatttaatcatacatta
cgtgaaaatgggattgctgaagcaacgccaattcaagagaaagcaatcccggttgttatg
gctggaaaagatataattgggcaagcaaaaacaggaacagggaagacattggcgttcgtc
ttaccaattctagaaaaaattgatcctgagtcaagtgatgtacaagctttaattgttgca
ccaactagagaattagcactacaaatcacaactgaaattgaaaaaatgcttgttcatcaa
gaaaatatcaatgttcttgcgatatatggtggtcaagatgttgcgcagcaaatgagaaag
ttaaaaggaaatacgcacattgttgtggcaacaccaggacgtttattagaccatttacgc
cgcgaaacgattgtattatccaatgtttctatgcttgtattagatgaagcagatcaaatg
cttcatttcggctttttatatgatatagaagacattttagaagaaacacctgagagtaaa
caaacgatgttattttcagcgacgatgccaaaagatattaaaaagcttgcgaagcgctat
atgaaagaacctgagatgattcaaattcaaagtgcggaagtaacggtgaataatattaag
caaggtattattgaaacgacagatcggacaaagcaagatgcactgcgccatgtgatggac
cgggatcagccgtttttagcagttattttttgtcgtacaaagcgtagagcgagtaagtta
tatgatgatttaaaagggtacggctataactgcgatgagcttcatggtgatttatctcaa
ggaaaacgggaacgagtaatgaagagttttcgtgatgcgaaaattcaatatttaatcgca
acagatgtagcagctcgtggattagatgtagaaggcgtaacacatgtatttaactatgac
attccagaagatgtagagagttatatacaccgaattggccgaactggacgcgctggtgga
tcaggccttgcaattacattcgttgcaccgaaagatgaaatgtatttaaaagagattgaa
aaaggcattggcgcaacgttgcaaagacaagagttggaactacctgttaaacaaaacgat
gatgcgagtgaaaaaaagaaaaaacagcaaatcaaaaaaccaaagaaaacaggtcaatac
ggtcaaaaagataaccctgggggatcaaagaatacaaaacaacgatcatttcataaacca
agtgaaaagaaaaatagcaaaaagcaaggtcagcagagacgcggtagataa
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