Bacillus pseudomycoides 219298: DJ92_5289
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Entry
DJ92_5289 CDS
T03239
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
bmyc
Bacillus pseudomycoides 219298
Pathway
bmyc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bmyc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DJ92_5289 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bmyc03019
]
DJ92_5289 (recQ)
03400 DNA repair and recombination proteins [BR:
bmyc03400
]
DJ92_5289 (recQ)
Enzymes [BR:
bmyc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DJ92_5289 (recQ)
Messenger RNA biogenesis [BR:
bmyc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DJ92_5289 (recQ)
DNA repair and recombination proteins [BR:
bmyc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
DJ92_5289 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HTH_40
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
HTH_7
HTH_45
HTH_35
Motif
Other DBs
NCBI-ProteinID:
AIK39074
LinkDB
All DBs
Position
complement(5148555..5150672)
Genome browser
AA seq
705 aa
AA seq
DB search
MFTKAQELLASYFGYSSFRRGQDETIKNVLAGKDTVCIMPTGGGKSICYQIPALVFEGTT
LVISPLISLMKDQVDTLVQNGISATYINSSISITEANQRIQLAKQGHYKLLYVAPERLDS
MEFVDQLIDMKIPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPEKPLVLALTATATPQ
VREDICRTLEIDQKNTIMTTFERENLSFSVIKGQDRNAYLADYIRQNKKESGIIYAATRK
VVDQLYEDLYKAGVSVARYHAGMNDHDRNEQQGRFLRDEVSVMVATSAFGMGIDKSNIRY
VIHYQLPKNMESYYQEAGRAGRDGLDSECILLYSSQDVQVQRFLIDQSTGESRFSNELEK
LQHMTDYCHTEQCLQSFILEYFGEEPKEDCGRCGNCTDERESVDVTRESQMVLSCMIRTN
QRFGKQMIAQVLTGSKNKKVIEFNFHTLPTYGLLSNRSVKEVSEFIEFLISEELITVEHG
TYPTLKVTAKGKEVLLGNENVLRKERVETRQIVGDHPLFEILREVRKEIAQGEGVPPFVI
FSDQTLKDMCAKMPQSENELLQVKGIGEHKLAKYGSHFLQAVIHFMEQNPDYAETMKIEV
VTERKKSGKASANSHLETYEMYKQGTELSTIAKERDLSRQTVENHLIRCYEEGMEVDWPS
FVPAEYESLIESAVQHAEGGLKSIKEQLPDEVSYFMIRAYLQIRK
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
ttgtttacaaaagcacaagaacttttagcttcctattttggctactcgtcattccgtaga
gggcaggatgaaacaattaaaaatgtattggctggaaaagatacagtttgtattatgcca
acaggcggtggcaaatcaatttgttatcaaattccagcactagtatttgaggggacgaca
ttagttatctcacctttgatctcacttatgaaagatcaagtagatacattagtacaaaac
gggatttcagctacatatattaatagttctatttcaattacagaagcaaatcaacgaatc
caattagcgaaacaaggtcattataagttgttatatgtggcgccggagcgtcttgattca
atggaatttgtagatcaattaattgatatgaagataccgatgatcgcaattgacgaagcc
cattgtatttcgcagtgggggcatgattttcgtccaagttatttacatatacatcgtata
ttggactatcttccagaaaaaccacttgtacttgcgttaactgcgactgcaacaccgcaa
gtgcgtgaagatatttgtcgtacgctagaaattgatcaaaagaatacaattatgacaacg
tttgaacgggaaaatttatcgttctcagtaatcaaaggacaggaccgaaatgcatattta
gcggattatattcgtcaaaataaaaaggaatctggaattatttatgcagcgacaagaaaa
gttgttgatcagttgtatgaagatttatataaagcaggcgtttcagttgcacgttatcat
gctggaatgaatgatcatgatcgaaatgaacagcaagggcgatttttacgtgatgaagtg
agtgttatggtagcgacatctgcatttggtatggggatagataaatcaaacattcgttat
gtgattcattatcaactcccgaaaaatatggaaagttattatcaagaagcaggacgtgct
ggtcgtgatggattagatagtgaatgtattttgttatattcttctcaggatgtacaagtg
cagcgttttttaattgatcaatctactggggaatcacgtttctcaaatgaacttgaaaaa
ctgcaacatatgacagattactgccatacagaacaatgtttacaatcatttattttagag
tactttggagaagagccgaaagaagattgtggacgctgcgggaattgtacggatgaacgt
gagagcgtcgacgttacgagagaatcacaaatggtcttatcgtgtatgattcgaacaaac
cagcgatttggaaagcaaatgattgcacaagtattaacgggatcaaaaaataaaaaagta
attgaatttaattttcatacattaccaacttacggtcttttatcgaaccgtagcgtaaaa
gaagtaagtgagtttattgagtttttaatttcagaagaattaattacggtagaacacggg
acgtatccaaccttaaaagtgacagccaaagggaaagaagtattactcggaaatgaaaat
gtgttacggaaagaaagagtagaaacaagacagattgtaggggaccatccactgtttgag
atattacgtgaagtgcggaaagaaattgcacaaggagaaggcgtaccaccgtttgttatt
ttctctgatcaaacgttaaaagatatgtgtgcgaaaatgccacaaagtgaaaatgaatta
ctacaagtaaaagggattggggagcataaacttgcgaagtatggttcccacttcttacaa
gcagttattcattttatggaacaaaacccagattacgctgaaacaatgaaaatagaagtt
gttacggaacgaaaaaaatctggaaaagcatcagcaaattctcacttagaaacgtatgaa
atgtataaacagggaaccgagttaagtacaattgccaaagaacgagacttatcacgccaa
actgtcgaaaaccacttaattcgttgttatgaagaaggtatggaagtagattggccaagt
ttcgttccagcagaatacgaatctcttattgaatcagcagtacaacatgcagaaggcgga
ttaaaatctattaaagaacaacttccagatgaagtgagttactttatgattcgtgcttat
ttacaaataagaaaatag
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