Bacillus mycoides ATCC 6462: BG05_454
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Entry
BG05_454 CDS
T03798
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bmyo
Bacillus mycoides ATCC 6462
Pathway
bmyo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bmyo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BG05_454 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bmyo03400
]
BG05_454 (mfd)
Enzymes [BR:
bmyo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BG05_454 (mfd)
DNA repair and recombination proteins [BR:
bmyo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BG05_454 (mfd)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MFD_D3
UB2H
RecG_dom3_C
TniB
AAA_16
PD40
Motif
Other DBs
NCBI-ProteinID:
AJH17944
UniProt:
A0AAP8GWI4
LinkDB
All DBs
Position
complement(433397..436927)
Genome browser
AA seq
1176 aa
AA seq
DB search
MIGLLEQFYKNEEIQSVINGLEDGLKEQLVSGMATSSRSLLMAALYKKTKQSQLIVTHNL
YQAQKVHEDLVALLGEKDVWLYPVNELIASEVGVASPELKAQRIEVLNRLATGENGIIVA
PVAGLRRFLPIKELWKQRQIEINLGQEIDLDALLHTLHHIGYERKSMVEAPGEFSLRGGI
LDIYPLTEELPFRIEFFDTEVDSIRLFDVDEQRSQDKKESVKFGPATEFLFSQEELKSGI
KHLEEGLTKTMQKLSDDKLKTTVLETVSHEIEMLKNGQSIEQMFKYLSIFYKEPASLIDY
LPENGVVILDEISRIQETASHLETEEAEWYISLLGEGTIIQDLSFSHSFEEFLHNKKRSF
VYLTLFLRHIAHTHPQNIVNVTCKTMQDFHGQMHLLKTEIDRWNEGNFTTVVLGTDDERV
KKLQHILSDYDIDADIVEATDILLPGRLQIAVGDLHAGFEMPMQKFVVITEKELFHKKVK
KSQRKQKLSNAERIKSYSELKVGDHVVHVNHGIGKFLGIETLEINGVHKDYLNIKYQGND
KLYVPIEQIDQVQKYVGSEGKEPKVYKLGGNDWKKVKTKVEKSVQDIADDLIKLYAEREA
SKGYAYTPDTAEQQEFESLFPYQETEDQLRSIEEIKKDMERGRPMDRLLCGDVGYGKTEV
AIRAAFKAIMDEKQVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIK
GLKDGTVDIVIGTHRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTAT
PIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGGQIYFLYN
RVEDIERKADEISMLVPDARVTYAHGKMNEGELESVMLSFLEGQHDVLVSTTIIETGVDI
PNVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAERRLQAIKEFT
ELGSGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRRGTDGVENTVN
VEIDLEVDAYLPDAYISDSKQKIMMYKQFRGISAIEDIEELQEEMIDRFGDYPQEVGYLL
QIANIKVLAMKEKIELIKQNKFEVTFLFSEQASQNIDGGKLFMLGSSFGRMIGLGMEGSQ
LKIVMKTNGLETSKWLTIAENLLKGLPDVKKEVINA
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgataggtttattagagcaattttataaaaatgaagaaatacaatcggttattaatggg
ctagaagatgggttgaaagaacaacttgtatcgggtatggcaacatcctctcgttcatta
ttaatggcagctttatataaaaagacaaagcaatcacaacttatcgtgacgcacaattta
taccaagcacaaaaagtacatgaagatttagtggcgttacttggtgaaaaagatgtttgg
ctatatccggtaaatgaattgatagcatcggaggttggtgttgcaagtccagaattgaag
gcacaacgtattgaagtgttaaatcgcttagctacaggagagaatgggattattgtagcg
ccagttgcagggctgcgtaggtttttaccaataaaagaattatggaagcaaaggcaaatt
gaaatcaatctagggcaagagattgatttagatgcactcttgcatactttacatcatatt
ggctacgagcgtaagtcaatggtagaagctccaggagagttcagtttacgcgggggaata
ttagatatttacccattaacggaagaattaccgtttcgtattgaattcttcgatacagaa
gtcgattctattcgattgtttgatgtggatgaacagcgttctcaagataaaaaggaaagt
gttaagttcggtccagcaacagagtttttattttcacaggaagaattgaaatcgggaatt
aagcatcttgaagaaggtttgactaagacgatgcaaaagctttccgatgataaattaaag
actactgtgcttgagacggttagtcatgaaattgaaatgttgaaaaacgggcagagtata
gaacaaatgtttaaatatttatctattttctataaagaacctgctagtctgatagattat
ttaccagaaaatggtgttgtgattttagatgagatttcccgtattcaagaaacagcatca
catcttgaaacagaagaagcggaatggtatatctcacttcttggcgaaggaacaattatt
caggatttatctttctcccactcgtttgaggagtttcttcataataaaaaaagaagtttt
gtatatttaacgttattcttacgccatatagcacacacacatcctcaaaatattgtaaat
gtgacatgtaaaacgatgcaagatttccacggacagatgcatttgttaaaaactgaaatt
gatagatggaatgaaggtaattttacgaccgttgtgcttggaacagatgatgaacgtgta
aaaaaactacaacatattttaagtgattatgatattgatgcagacattgtagaggcgaca
gatatcttattgcctggaaggttacaaattgctgtaggtgatttacatgcaggctttgaa
atgccgatgcaaaagtttgttgtcattactgaaaaggagctttttcataagaaggttaaa
aaatcacaacgtaagcaaaagttatctaacgctgaacgtattaaaagttattcggaatta
aaagttggagaccatgtagttcatgtaaatcatggtataggtaaatttttaggtattgag
acattagagattaatggtgttcataaagattatttaaatattaaatatcaaggtaatgat
aagttatacgttccaattgaacaaattgatcaagtgcaaaaatacgtagggtctgaaggt
aaggaaccaaaagtttataaattaggcggaaatgattggaagaaggtcaaaacgaaagtt
gaaaaatctgtacaagacattgcagatgacctaattaaattatatgccgagcgtgaagct
tcgaaaggttatgcatatacaccagatacggcagagcaacaagagtttgaatctttattc
ccatatcaagagacagaggatcaattacgttctattgaagagattaagaaagatatggaa
cgcggacgtccgatggataggcttctttgtggtgacgtaggatatggaaagacggaagta
gctattcgtgcggcatttaaagcaattatggatgaaaaacaagttgcgattttagtacca
acaacaatccttgcacaacaacactatgaaacaattcgagagcgttttcaagattacccg
attaatatagggttactaagtagattccgcacacgaaaacaacaaaatgaaacgattaaa
ggtttaaaagatggaacggtggatattgtaatcggaacgcatcgtattttatctaaagat
gttacttataaagatttaggacttcttattattgatgaagaacaaagattcggcgttaca
cataaagaaaaaattaaacaattgaaagcaaatgttgacgtgttaacattaacggcaact
ccgattccacgtacacttcatatgtctatgcttggtgtgcgcgatttatctgttattgag
acaccaccagagaatcgtttcccagtacaaacatatgtagtagagtataatccagcgtta
atgcgagaagcgatagagcgagagttagcaagaggcggtcaaatttacttcctatataac
cgtgtggaggatattgaaagaaaagcagatgaaatttcgatgttagttccagatgctcgt
gtaacatacgcacatgggaaaatgaatgaaggtgaattagagtctgttatgctatcgttt
ttagaagggcagcatgatgttcttgtaagtacaacaattattgagacgggtgtagatatt
ccgaatgtaaatacattaattgtatttgatgcagatcgtatgggactatcgcagttgtat
cagcttcgtggtcgtgttgggcgttctaatcgcgtcgcgtatgcatactttgcatacaaa
cgtgataaagtgttatcggaagttgcagagaggcgtctgcaagcaattaaagagtttaca
gagcttggatctggtttcaaaattgcgatgagagacttatcaattcgtggtgcgggtaat
ttgttaggggcagaacaacatggatttattgattctgtcggatttgatctatattctcaa
atgttaaaagatgcaattgagcaacgtagaggaacagacggagttgaaaataccgttaat
gttgaaattgatttagaagtagatgcgtatttaccggatgcgtacatttcagatagtaaa
caaaaaattatgatgtataaacaatttagaggtatttctgcaattgaagatattgaagag
ttgcaggaagagatgatcgacagatttggtgattatccacaagaagttggttatttatta
caaattgcaaacattaaagtgttggcgatgaaagaaaaaattgagttaattaagcaaaat
aaatttgaagtaacattcctgttttctgaacaagcgagccaaaatatagatggtggaaaa
ttattcatgctaggaagtagttttggccgtatgatcggtcttggtatggaggggtcacaa
ttgaaaattgtgatgaaaacgaatggattagagacgtcgaaatggttaacaattgctgaa
aatttattaaaaggcttgccagatgtaaaaaaagaagtaataaatgcctaa
DBGET
integrated database retrieval system
