Brucella melitensis M28: BM28_B0578
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Entry
BM28_B0578 CDS
T01852
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
bmz
Brucella melitensis M28
Pathway
bmz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bmz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BM28_B0578
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bmz03019
]
BM28_B0578
03016 Transfer RNA biogenesis [BR:
bmz03016
]
BM28_B0578
Enzymes [BR:
bmz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
BM28_B0578
Messenger RNA biogenesis [BR:
bmz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BM28_B0578
Transfer RNA biogenesis [BR:
bmz03016
]
Prokaryotic type
tRNA degradation factors
BM28_B0578
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
S1
CSD2
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
ADZ67827
LinkDB
All DBs
Position
2:572076..574427
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AA seq
783 aa
AA seq
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MARRFSKSDTVRSARTERRAATAQSKDSAAFLPTREEVLKYIEENPDRAGKRELAKAFNI
KGDARVYLKDLLRELADEGLVEKRARKLSRPGSLPSVAVLDITGRDEDGGLLARPAEWDE
ASHGKPPVVLLRRTRLNKTSESGPVVGVGDRVLAKIFRNEDHAGPDFSARVMKRLEHHAN
AVLGVVRKLGNGEWRLEPVNRKQGEVQLDPAMLENAESGDLVEVELLSARRYGLPRGKVR
QVVGSIDSEKALSMIAIHEHEIPHVFPDEVLREAETAGPATLEGREDWREIPLITIDPAD
AKDHDDAVYAEPDTDPENPGGQVVIVAIADVAAYVRPGSALDREAQKRGNSVYFPDRVVP
MLPERISNDLCSLREMEDRPALAVRMIFSADGRKKSHKFHRIMMRSAAKVAYGQAQAAID
GAPDDKTGPILDTVLKPLWNAYAVLKRGRDAREPLELDLPGKKILLTPEGKVDKVIVPER
LDAHKLIEEFMIQANVSAAETLEGRHQPLIFRIHGEPALAKQETLREFLRTLDLNLAKGA
QLQPAQFNRILAAVDGTDHQELVNQVVLRTQSQAEYSPDNIGHFGLHLRRYAHFTSPIRR
YADLIVHRALIKALGLGTDGLTSAEEAQLEEISALISATERRAMLAERETVDRLIAHFLA
SHLGDEYEGRVTGVTRAGLFVNLATYGADGLVPISTLGDEYYLYDEANHAIAGERSGRGF
RLGDTVTVRLVEALPVAGALRFEMVSEPHPLPMSTRSHHKASRAMRGRKGKPAGIPRHKR
RGH
NT seq
2352 nt
NT seq
+upstream
nt +downstream
nt
ttggcacgccgtttttccaaatccgataccgtacgatccgcacggaccgagcggcgtgca
gccacagcccaatcgaaagattccgcagcctttttgccgacacgggaagaggtcctcaaa
tatatcgaggaaaatcccgatcgcgcgggcaagcgggaactcgccaaggctttcaacatc
aagggcgatgcacgggtctatctgaaagacctgttgcgtgagcttgccgatgaaggtctc
gtcgaaaagcgcgcgcgcaagctttcgcgtcccggctcgctgccatcggttgcggttctc
gatattacgggccgggatgaggatggaggcctgcttgcccgcccggctgaatgggatgag
gcgagccacggcaagccgccagtggtcctgctgcggcgaacccggcttaacaagacgtca
gaaagtggccctgtcgtcggcgttggcgaccgcgttctggcgaaaatcttccgcaatgaa
gatcacgcagggccggatttttccgcccgcgtgatgaagcggctggaacatcacgccaat
gccgttctgggcgtggtgcgcaaacttggcaatggcgaatggcggctggagccggtcaat
cgcaaacagggcgaagtgcagcttgatcccgccatgctggaaaatgccgaaagcggcgat
ctggtggaagtagaactgctttccgcgcgccgttacggcctgccgcgcggcaaggtccgt
caggtggttggctccatcgatagtgaaaaggcgctgtcgatgatcgccattcacgaacat
gaaatcccgcatgtttttcctgacgaagtgctgcgcgaggctgaaaccgcaggccctgcc
acgctggaaggccgcgaagactggcgcgaaatcccgctcatcaccatcgatccggccgac
gccaaggaccatgacgatgcggtctatgccgaaccggatacggacccggaaaatcccggc
gggcaagtcgtcatcgtcgccatcgccgatgtcgccgcctatgtgcggcccggctcagcc
cttgatcgcgaagcgcagaaacgcggcaattccgtctattttcccgaccgcgttgtaccg
atgctgcccgaacgcatctccaatgatctttgctccctgcgcgagatggaagaccggccg
gcgctggcggtccgtatgattttcagtgccgacgggcgcaagaaatcacacaagttccac
cgcatcatgatgcgctcggccgccaaggttgcctatggccaggcgcaagccgccatagac
ggcgcccccgatgacaagaccgggccgattcttgataccgttctaaagccgctctggaac
gcctatgcggttctcaagcgcgggcgtgacgcacgcgagccgctggaactcgatctgccg
ggaaagaaaatcctactgacgccggaaggcaaggtggacaaagtcatcgtgccggaacgc
ctcgatgcgcataagctcatcgaagaattcatgattcaggccaatgtgtctgccgccgaa
acgctcgaaggacggcaccagccgcttattttccgcattcacggtgaaccggcgctggcc
aagcaggaaaccctgcgtgagttcctgcgtacgctggatctcaatcttgccaagggcgcg
caactgcagcccgcgcagttcaatcgcattctggcggcggtcgatggcacagaccatcag
gaactcgtcaatcaggtcgtgctgcgcacccagagccaggccgaatacagccccgacaat
atcggccattttggcctgcatctgcgccgttatgcgcatttcacctcaccaatccgccgt
tatgctgatctgatcgtgcaccgcgcgctcatcaaggcgctggggcttggcacggacggg
ttgacgagcgcggaagaagcgcagcttgaagagatttcggccctgatttcggccaccgaa
cgccgcgccatgctggctgagcgtgaaaccgtggatcggctgatcgcgcatttcctcgcc
tcgcatctcggcgacgaatatgaggggcgcgttaccggcgtcacgcgcgccggtctgttc
gtcaatcttgcgacatatggcgcagacggactggtgcccatttcaactttgggcgatgaa
tattatctatatgacgaagcaaaccacgcaatcgcgggcgaacgaagcggcaggggcttt
cgtctgggcgatacggtaacggtgaggcttgtggaagcactccccgttgcgggtgcgctt
cgttttgaaatggtttccgaaccgcaccccttgcccatgtcgacgcgctcgcatcataag
gcgagccgggcaatgcggggccggaaaggcaagccggcgggtattccccgccacaagagg
agaggtcactga
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