Brassica napus (rape): 106345878
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Entry
106345878 CDS
T04128
Name
(RefSeq) splicing factor-like protein 1
KO
K13095
splicing factor 1
Organism
bna
Brassica napus (rape)
Pathway
bna03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106345878
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bna03041
]
106345878
Spliceosome [BR:
bna03041
]
Complex A
Other components
Complex A specific factors
106345878
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SF1-HH
KH-I_KHDC4-BBP
RRM_1
KH_1
KH_12
zf-CCHC
eIF3g
RRM_5
KH_PNO1_2nd
PHD_4
zf-CCHC_2
Motif
Other DBs
NCBI-GeneID:
106345878
NCBI-ProteinID:
XP_013640539
UniProt:
A0ABQ8DSS2
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Position
A3:6837971..6841271
Genome browser
AA seq
750 aa
AA seq
DB search
MDSIELNNSNPSLDQPPPPSSETVASLAPDQIPAPEATNGEKNQSDDTTTRRKRRSRWDP
PPSESVNNTTAEGGGGDSGTGTRKRKSRWADDEPKPTIQLPDFVKEFGGGIEFDPEIQVL
NSRLLDISRLLQSGMALDDRPEGQRSPSPEPVYDNMGIRINTREYRARERLNRERQEIIS
QIIKKNPAFKPPADYRPPKLQKKLFIPMKDYPGYNFIGLIIGPRGNTQKRMERETGAKIV
IRGKGSMKEGRLQKKDMKYDPAENEDLHVLVEADTQEALDAAAGMVEKLLQPVDEVLNEH
KRQQLRELATLNGTIRDEEFCRLCGEPGHRQFACPSRLNTFKSDVLCKICGDGGHPTIDC
PVKDTTGKKMDDEYQNFLAELGGTLPESSLKQSSTTLALGAGSSGSNPPWANNGGSGASA
HPGLGSNPAKPSKEYDEKNLYIGFLPTMLEDDGLINLFSPFGEIVMAKVIKDHVSGLSRG
YGFVKYADVQMANSAIQAMNGYRLEGKTLAVRIAGKPAPPPGPPAPPPPTQSYPPPPSQQ
YGAGGQLPNPSYSPAPVPWGGPVPSYSPYAPPPPPPGSYHPVPGQHMPPYGMHYPPPPPP
PHVTQAPPPGTTASESQQSFPPGVVQADSGTPPSSVPPNVYGSSLGQPPYMSYPSYYTAV
PPPVPTSSADHSQSMSNMPWASNPPVSSTDHSQGLGNAPWAPNPPMPPSVGYSQSMGNAP
WAPKPPAQPPAENPSAVGDSEYEKFMAEMK
NT seq
2253 nt
NT seq
+upstream
nt +downstream
nt
atggattccatcgaattgaacaattcgaatccttccctcgatcaacctcctcctccttcc
tctgaaaccgtagcttccctcgctcccgatcagattccggctcccgaagctaccaacggc
gagaagaatcaatccgatgataccacaacccggaggaagcgtcggagcaggtgggatcct
ccgccttccgagtcggtcaacaatactaccgccgaaggtggtggtggcgattccggtacc
gggactaggaagcgtaagtcgagatgggcggacgatgagccgaagccgacgattcagctt
cctgatttcgttaaggagttcggtggaggtatcgagttcgatcccgagattcaggttttg
aatagcaggttgcttgatatcagtaggctgcttcagtccggtatggctttggatgataga
cctgaaggccagaggtctccttcgcctgagcctgtgtatgataacatggggattaggatt
aacactagggagtacagagcgagggagaggttgaatagagagaggcaagagattatctct
cagatcatcaaaaagaatcctgcttttaaacctcctgcggattataggcctcccaagctc
cagaagaagctgttcattccgatgaaggattatcctggctataatttcattggtcttatt
attggtcccagggggaatactcagaagagaatggagagggagactggtgctaagattgtg
attaggggtaaagggtctatgaaagaaggtaggctgcagaagaaggatatgaagtacgac
cctgcagagaatgaggatttgcatgttttagtcgaggctgatactcaggaagctcttgat
gctgctgctggtatggttgagaagctcctgcagcctgttgatgaggtgctgaatgaacac
aagaggcagcagctgagggagcttgctaccttgaatgggactataagggatgaagaattc
tgtaggctgtgtggtgagccaggacataggcagtttgcttgtccgtctcgtttgaatacc
tttaaaagtgatgtgctttgcaagatttgtggtgatggtggacaccctactattgattgc
cctgtgaaggataccactgggaagaaaatggatgatgagtatcagaactttttggcagag
ttaggaggaactctccctgaatcttctcttaaacagagtagtactaccttggctctggga
gcgggaagttccggaagtaatcctccatgggctaacaatgggggcagtggggcaagtgcg
catcctggcttagggtcaaatccagccaaaccctctaaagaatatgatgaaaaaaatctg
tacattgggttcttgcctacgatgctcgaggacgatggtttgattaatcttttttcaccc
tttggtgaaattgtgatggcaaaggtaatcaaggaccatgtttctggtctgagcagaggc
tatggttttgtgaagtacgcagatgtccagatggccaattcggcaatacaggcgatgaat
ggttatcggttagaaggtaaaacacttgctgtcaggattgctggtaaaccggcaccgcct
cctgggccaccggcacctccgccacctactcaatcttatcctcctccaccatcacaacaa
tatggcgctggtgggcaactgccaaatccttcatattcaccggctccagttccttggggt
ggtcctgttccttcctattctccatatgctcctccgcctcctcctcctggttcttaccat
cctgtccctggtcaacatatgcctccttatggaatgcactacccaccaccaccaccacct
cctcatgtgacacaagctcctccgcctggcactactgctagtgaaagccagcaaagcttc
ccgccaggagtagtacaagcagacagtggtactcctccttcatctgtgccaccaaatgtc
tatgggagttcgcttggacagcctccatatatgagttatccatcttattacactgctgtt
ccacctccagtgccgacgtcgtctgctgatcattcccaaagcatgagtaacatgccatgg
gccagcaatcctccggtgtcgtcaactgatcactcgcaaggtctaggtaatgcaccttgg
gcacctaaccctcctatgccaccttctgttggatactcgcagagcatggggaacgctccc
tgggctcccaagcctccagcacagccacctgcagagaatccatctgctgttggagattct
gagtatgagaagttcatggctgagatgaagtag
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