Brassica napus (rape): 106346233
Help
Entry
106346233 CDS
T04128
Name
(RefSeq) probable rhamnogalacturonate lyase B
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
bna
Brassica napus (rape)
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
106346233
Enzymes [BR:
bna01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
106346233
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
Motif
Other DBs
NCBI-GeneID:
106346233
NCBI-ProteinID:
XP_013640953
LinkDB
All DBs
Position
A6:complement(3796336..3804423)
Genome browser
AA seq
633 aa
AA seq
DB search
MSSVKLQLQDKGNHVVMDNGIARVTLSKPDGIVTGIEYNGIDNLLEVLNEESNRGYWDLV
WSGPGTAGTFDVIKGTKFEVIMETEEQIEISFTRKWDPSQEGKAVPLNIDKRFVMLRGSS
GFYTYAIYEHLKEWPAFSIAETRIAFKLRKEKFHYMAITDDRQRFMPLPDDRLPDRGQAL
AYPEAVLLVNPVEPQFKGEVDDKYQYSCENKDITVHGWICTEQPSVGFWLITPSHEYRTG
GPQKQNLTSHVGPTALAVFMSAHYTGEDLVPKFSEGEAWKKVFGPVFVYLNSSTDDDNDP
LWLWQDAKSQMNVEVESWPYSFPASDDYVKAEQRGNVVGRLLVQDRYVDKDFIAANRGYV
GLALPGAAGSWQRECKDYQFWTRTDEEGFFYINGVRPGQYNLYAWIPGFIGDYKYDDIIT
ITPGCYMYMEDLVYQPPRNGATLWEIGFPDRSAAEFYAPDPNPKYINKLYQNHPDRFRQY
GLWERYAELYPDKDLVYVVGSSDYSKDWFYAQVTRKKDSKTYQGTTWQIKFELKNIDKDH
TYTLRVAIASATFAELQVRVNDANASPLFTSGLIGRDNSIARHGIHGLYWLFNVEVAGSK
LVEGENTLFLTQPRSISPFQGIMYDYIRFEAPS
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtctgttaaactgcagttgcaagataagggcaatcatgtggtgatggataatggc
attgctcgtgttacattatcaaagcctgatggaattgttacaggtatcgagtataatggc
atcgataacttgctcgaggttcttaatgaagaatccaacagagggtattgggacctcgtt
tggagtggaccaggaaccgctggtacatttgatgttataaaaggaacaaagtttgaggta
ataatggaaaccgaagaacagattgagatctctttcacaagaaaatgggacccatcacaa
gaaggcaaagctgtccctttgaacattgacaaaagatttgttatgcttcgtgggtcgtca
ggattctacacttatgccatctacgagcacttgaaagagtggcctgctttctcaatagct
gaaactagaattgcattcaagctaagaaaggagaagtttcactatatggcaataactgat
gataggcagaggttcatgccattgcctgatgaccggttaccggatagaggccaagctctg
gcttaccctgaagctgttctacttgttaaccctgttgagcctcagtttaaaggagaggtt
gatgataagtaccaatattcatgcgaaaacaaagacattactgtccatggatggatatgc
acggagcaaccatcagttggtttctggctcataactcctagccatgagtaccgaactggt
ggacctcaaaaacagaacttgacatctcacgttggacccactgctcttgctgtgtttatg
agtgcacactatacaggggaggatttagtgccaaagttcagtgaaggagaggcatggaag
aaggtgtttggaccggtctttgtctatttaaactcctctactgatgatgataatgaccct
ctttggctctggcaagatgctaaatctcagatgaatgtggaagtagaaagctggccttac
agttttccagcttctgatgattatgtgaaagcagagcaacgtggtaatgttgttggcaga
cttctcgttcaagacaggtacgtagataaagatttcattgcagcaaatagaggttatgtt
ggtttggctctgcctggagctgctggttcatggcaacgagaatgcaaggactatcaattc
tggacaagaacagatgaagaaggattcttttacataaatggagtacgaccaggccaatac
aatctctatgcatggattcctggttttattggcgactataaatacgatgacatcatcacc
atcactccaggttgttacatgtatatggaagatcttgtatatcagcctccaagaaatgga
gcaaccttgtgggaaattggttttccagatcgatcagccgcagagttttatgctcctgat
ccgaatccaaaatatatcaacaaactttatcaaaatcaccctgacaggttcagacaatat
ggattatgggaaagatacgcagaactatacccagataaagacttggtatatgttgttggc
tctagcgactatagtaaagactggttttatgctcaagtcactagaaaaaaggatagcaaa
acatatcaaggaacaacatggcaaatcaaattcgaactcaaaaacattgataaggatcac
acatatactttacgagtagccatcgcatccgctacttttgccgaactccaagtacgtgta
aatgatgcgaatgcaagcccgttgttcacgagcggattgatcgggagagacaactcgata
gcaagacatggaatacatggattgtactggttgttcaacgtggaagtggctggttcaaag
cttgtagaaggcgagaatacattgtttctcacgcagccaaggtccataagtcctttccaa
gggattatgtatgactacatccgattcgaagctcccagctaa
DBGET
integrated database retrieval system
