Brassica napus (rape): 106346234
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Entry
106346234 CDS
T04128
Name
(RefSeq) probable rhamnogalacturonate lyase B
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
bna
Brassica napus (rape)
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
106346234
Enzymes [BR:
bna01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
106346234
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Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
PhoLip_ATPase_N
CarboxypepD_reg
CBM_4_9
Motif
Other DBs
NCBI-GeneID:
106346234
NCBI-ProteinID:
XP_022576330
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Position
A6:complement(3790143..3793952)
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AA seq
694 aa
AA seq
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MFKLSSHVYQLVTTIGYRRHLLRQGGWIVALIMFLSLFEIAISQNQSSDPESTQVLQLHY
QDGHVVVDNGIFQLTLSNPEGFVTGVRYNGIENVLAYTGNEHDRGYWDLVWNFPGKKIKK
SKGTLDRIEATKMEVITQSDEEIELSFSRTWNASSTTALPVNIDKRFVMLRNSSGFYSYA
IFERLKGWPAVELDNIRLVFKLNQDKFHYMAISDERQRYMPIPEDRIPPRGKPLAYPEAV
QLLDPMEPEFKGEVDDKYEYSMESKDIKVHGWISTNNSVGFWQITPSNEFRSAGPVKQFL
GSHVGPTNLAVFHSTHYVGAELIMSFEEGEAWKKVFGPVFIYLNSFSKGVDPLLLWTQAK
NQTKIEEEKWPYNFTASSDFPASDQRGSVTGRLLVRDRYIRSEDIPANGSYVGLAAPGDV
GSWQREYKGYQFWSKADEKGYFSINNVRTGHYNLYAFVPGFIGDYHNQTVFNISPGTNIS
LGDLVYEPPRDGVTLWEIGVPDRTAAEFYIPDPNPTFTNKLYLNRSDKYRQYGLWERYAE
LYPHEDMVYNVDVDSYSKKWFYMQVTRKQADGGYNGTTWQIKFQLDEKMKNFTGNFKLRI
ALATSNVAELQVRVNDVSKDPPLFTTGEIGKDNTIARHGIHGLYWLYSVNVPASSLRNGN
NTIYLTQPLARSPFQGLMYDYIRLECPDSISHLT
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atgtttaagttgtcttcacatgtttaccagctcgtgacgaccataggttaccggagacac
ttactgagacagggaggatggatcgttgctttgatcatgttcttgtctttgtttgaaatt
gcgatctcccaaaaccaaagttctgatccagaatcaacacaagtcttgcagttacattac
caagatggacatgtggtggtggataatggaatttttcaattaactttgtcaaaccctgag
ggatttgtcaccggagttaggtacaatggtatcgaaaatgtacttgcctacaccggcaat
gaacatgatagaggttactgggacttagtgtggaactttccagggaaaaaaattaagaag
tccaaaggcacattagaccgtattgaagcaacaaagatggaagtgataacgcagagcgat
gaagagatagagctatcgttttcaaggacatggaatgcttcttcaactacggctcttcca
gtaaacatagacaagaggtttgtaatgctgcgaaactcgtccgggttctacagttatgcc
atcttcgagaggttaaaagggtggcctgctgttgaactcgacaatatccgattagtattt
aagctaaaccaggacaagtttcattacatggcgatttcagatgagagacaaaggtacatg
cctataccagaagatcggattcctcctcgaggtaagcctcttgcttacccggaggccgtt
cagcttctcgaccctatggagcctgagtttaaaggagaggtggatgacaagtatgaatac
tcaatggagagtaaagacataaaagttcatggatggataagcacaaataactcagttggt
ttctggcaaatcactccgagcaacgagttcagatctgctggtcctgtcaagcagttccta
ggctcccatgtcggtccaaccaacctcgcggtattccacagcactcactatgttggagca
gaactaatcatgagttttgaagaaggtgaagcatggaagaaagtgtttggacctgtcttt
atttatttaaactctttttctaaaggagttgatcctctcttgctatggactcaagccaag
aaccagacaaagattgaagaagagaaatggccttataacttcacagcttcaagtgacttc
cctgcatctgaccaaagagggtctgttaccggcagattacttgttcgagaccgatacata
aggagtgaggatatacctgcgaatggttcctacgtgggtttagctgcaccaggagatgtt
ggctcatggcaaagagaatacaaaggttatcagttctggtcaaaagcagacgagaaagga
tacttttctatcaacaatgttagaactggtcattacaatctctatgcatttgttcctgga
ttcatcggtgattaccacaaccagaccgttttcaacatctctccaggtacgaatattagc
ttaggtgacttggtgtatgagcctccaagagacggtgtaactctatgggagatcggtgta
ccagaccgaaccgctgcagagttctacattcctgaccctaacccgacgtttactaacaaa
ctatacctaaaccgttctgataaatacagacaatatggattatgggaacggtatgccgaa
ctgtacccccatgaagatatggtttacaatgttgatgttgatagttactccaaaaagtgg
ttctacatgcaagttacaaggaagcaagctgatggaggatacaacggtacaacatggcag
atcaagtttcaactcgacgaaaaaatgaaaaacttcactggaaatttcaaactgaggatc
gctctagccacttcaaatgtagcagaactgcaggttcgtgtgaacgatgtttctaaggat
ccaccattgtttacaacgggggagataggaaaggataatacgattgcaagacatggtata
catggactctattggctatacagtgtgaatgttccagcttcttctcttcgcaatggaaac
aacaccatatacctaacccaaccacttgccagaagcccttttcaaggactcatgtatgac
tatattcgtctcgagtgtcctgattccatcagtcatctcacttag
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