Brassica napus (rape): 106346267
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Entry
106346267 CDS
T04128
Name
(RefSeq) phytochrome A
KO
K12120
phytochrome A
Organism
bna
Brassica napus (rape)
Pathway
bna04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
106346267
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Motif
Pfam:
PHY
PAS
PAS_2
GAF
PAS_9
HATPase_c
PAS_4
HisKA
PAS_8
Motif
Other DBs
NCBI-GeneID:
106346267
NCBI-ProteinID:
XP_013640991
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All DBs
Position
A6:complement(3667105..3672328)
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AA seq
1123 aa
AA seq
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MSGSRPSHSSEGSRRSRHSARIIAQTTVDAKLHADFEESGSSFDYSTSVRVTGPVVENQP
PRSDKVTTTYLHHIQKGKLIQPFGCLLALDEKTFKVIAYSENAAELLTMASHAVPSVGEQ
GALGIGTDIRSLFTAPSASALQKALGFGDVSLLNPILVHCKTSAKPFYAIVHRVTGSIIV
DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVM
AYKFHDDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHVRV
LQDEKLSSDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDGEGDTAAPDSTAP
QKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKEVELENQIVEKNILRTQTL
LCDMLMRDAPLGIVSQSPNIMDLVKCDGAALLYKDKVWKLGITPSEFHLQEIASWLCEYH
TDSTGLSTDSLHDAGFPRALALGDSVCGMAAVRISSKDMIFWFRSHTAGEVRWGGAKHDP
DDRDDARRMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDGETTDVNTKI
IHSKLNDLKIDGIQELEAVTSEMVRLIETATVPILAVDSDGLVNGWNTKIAELTGLPVDE
AIGKHLLTLVEDSSVEIVKRMLENALEGTEEQNVQFEIKTHLSRADAGPISLVVNACASR
DLHENVVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIIQNPNPLIPPIFGTDEFGWCTEWN
PAMSKLTGLKREEVMDKMLLGEVFGTQKSCCRLKNQEAFVNLGIVLNNAVTSQEAEKVPF
AFFTRGGKYVECLLCVSKKLDREGVVTGVFCFLQLASHELQQALHVQRLAERTALKRLKA
LAYIKRQIRNPLSGIMFTRKMMEVSELGPEQRRILQTSALCQKQLSKILDDSDLESIIEG
CLDLEMKEFSLNEVLTASTSQVMMKSNGKSVRITNDTGEEVMSDTLYGDSIRLQQVLADF
MLMSVNFTPSGGELTVTASLRKDQLGRSVHLAYLEIRITHTGAGLPEFLLNQMFGTEEDM
SEEGLSLMVSRKLVKLMNGDVQYLRQAGKSSFIITAELAAANK
NT seq
3372 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggttctaggccgagccactcctccgagggctcaaggcggtcaagacacagcgct
aggatcattgcgcagaccactgttgacgcaaagctccacgctgacttcgaggaatcaggc
agctcctttgattactcaacctcggtccgcgtcaccggacccgttgtggagaaccagcca
ccaaggtctgacaaagtgaccacgacttatctccatcacatacagaaaggaaaactgatt
cagcccttcggttgtttgctcgccttggatgaaaagaccttcaaagtcattgcctacagc
gagaacgccgccgagctgttgacaatggccagtcatgcagtccctagtgttggtgaacag
ggtgctctaggcatagggacggatataaggagcctcttcactgctcctagcgcctctgcg
ttgcagaaagcgcttggattcggagacgtctcgctcttgaatcccattctcgtgcattgc
aagacttccgcaaagcccttttacgcgattgtgcacagggttacagggagcatcatcgtc
gacttcgaaccggtgaagccttacgaagtccccatgacggctgctggtgctttgcaatcg
tacaagctcgctgcaaaggccatcactaggctgcagtctttgcccagcgggagcatggag
aggctctgcgataccatggttcaggaggttttcgaactcactgggtatgacagagtgatg
gcttataagtttcacgacgatgatcacggagaggttgtctccgaggttacaaagcctggt
ctagagccttatcttggcctccattatccagccaccgatatccctcaggcggctcgtttt
ctctttatgaagaacaaggttcggatgatagttgattgcaacgcaaaacatgtgagggtg
cttcaggacgaaaagctttcctctgatctcaccttgtgcggctccacgctcagagcgccg
cacagctgccatctgcagtacatggccaacatggattctattgcatctcttgttatggct
gttgtggtaaacgaggaggacggagaaggtgacaccgccgcacctgattccaccgcgcct
cagaagaggaagaggctgtggggattggtggtttgtcacaacaccactccgaggtttgtt
ccgtttcctctcaggtacgcctgcgagtttctagcgcaagtgtttgcgatacacgtcaac
aaggaggtggagctggagaatcagattgttgagaagaacatcttgcgcacgcagacgcta
ctgtgcgatatgctgatgcgtgacgctcccctggggattgtctcacagagccccaacata
atggaccttgtgaaatgcgatggagcagctctattgtacaaagacaaggtatggaagctg
gggataactccgagcgagttccatctccaggagatagcttcgtggctgtgcgagtaccac
actgattcaactggtctgagcactgatagcttgcacgacgctgggtttccaagagctcta
gctcttggagactcggtctgcggaatggcggctgtgaggatatcttcgaaagacatgatc
ttctggttccgttctcacaccgctggtgaagtgagatggggaggtgcaaagcatgatcca
gacgatagggatgacgcgaggagaatgcacccgaggtcttccttcaaggccttcctcgaa
gtggtgaaaacgaggagtttgccttggaaggactacgagatggatgccatacactcgttg
cagcttattctgaggaacgctttcaaggatggtgaaactactgatgtgaatacgaagatc
attcactcgaagctgaatgatttgaaaattgatggtatacaagagctagaagctgtcact
agcgagatggttcgtttgatcgagactgctactgtgcctatattggcggttgattctgat
gggttggttaatggttggaacacgaagattgctgagctgactggtcttccggttgatgaa
gcaatagggaagcatctcctcacacttgttgaagattcttctgtggaaatcgttaagagg
atgttggagaatgcattagaaggaactgaggagcagaatgtccaatttgagatcaagacg
catctgtcaagagctgacgctggaccaataagtctagtggtaaacgcatgcgcaagtaga
gacctccacgaaaacgtggttggtgtgtgctttgtagctcatgatcttacaggacagaag
actgtgatggacaagttcactcgcatcgaaggtgactacaaggccatcatccagaatcca
aaccctctgatccctcccatattcggcaccgacgagttcgggtggtgcacggagtggaat
ccagcgatgtcaaagctaacaggtctgaagcgagaggaagtgatggacaagatgctgtta
ggagaagtcttcgggactcagaagtcatgttgtcgtctgaagaatcaagaagcgtttgtg
aaccttgggattgtgctgaacaatgctgtgactagccaggaggcggagaaagtgccgttt
gcttttttcacgagaggtgggaagtatgtggagtgtctgttgtgtgtgagtaagaagcta
gacagggaaggtgtggtgacaggagtcttctgtttcctgcagcttgctagccatgagctg
cagcaagctcttcatgttcagcgtctagctgagcggaccgcgttgaagaggttaaaggcc
ttagcttacattaaaagacagatcaggaatccgctgtccggtatcatgttcacaaggaaa
atgatggaagtgtctgagttaggaccagagcagagaaggattctgcaaactagcgctttg
tgtcagaagcagctcagcaagatcctggatgattctgatctcgaaagcatcattgaaggg
tgtttggatcttgagatgaaagagttcagcttaaacgaagtgttgactgcttccacaagt
caagtgatgatgaagagtaacggaaagagcgttaggataacaaatgatacaggagaagaa
gtgatgtctgatactttgtatggagacagtatcaggcttcagcaagtcttggcggatttc
atgctgatgtctgttaactttacaccatccggaggagagctgactgttacagcttcactg
aggaaagatcagcttggaagatctgtgcatcttgcttatttggagatcagaataacgcat
acaggagctgggttaccagagtttttgctaaaccaaatgtttggaactgaggaagatatg
tcggaggaaggactaagcttgatggttagccggaaacttgtgaagctgatgaatggagat
gttcagtacttgagacaagctgggaaatcgagttttatcatcactgcagaactcgctgca
gcaaacaagtag
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