KEGG   Brassica napus (rape): 106346351
Entry
106346351         CDS       T04128                                 
Name
(RefSeq) DNA polymerase epsilon catalytic subunit A
  KO
K02324  DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
Organism
bna  Brassica napus (rape)
Pathway
bna03030  DNA replication
bna03410  Base excision repair
bna03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:bna00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    106346351
   03410 Base excision repair
    106346351
   03420 Nucleotide excision repair
    106346351
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:bna03032]
    106346351
   03400 DNA repair and recombination proteins [BR:bna03400]
    106346351
Enzymes [BR:bna01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     106346351
DNA replication proteins [BR:bna03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   DNA polymerase epsilon complex
    106346351
DNA repair and recombination proteins [BR:bna03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DNA polymerase epsilon complex
      106346351
SSDB
Motif
Pfam: DUF1744 POL2_thumb DNA_pol_B_exo1 DNA_pol_B zf-DPOE zf_DPOE_2 DNA_pol_B_exo2 RNase_H_2
Other DBs
NCBI-GeneID: 106346351
NCBI-ProteinID: XP_048638013
LinkDB
Position
A6:3207609..3222938
AA seq 2174 aa
MSGDNRRWDRKDSRRSNTQKVVKTAEDELESKLGFGLFSEGETRLGWLLTFASSSWEDPD
TGKTYSCVDLYFVTQDGFYFKTKYKFRPYFYAATKEKMELEVEAYLRRRYERQVADIEIV
EKEDLDLKNHLSGLRKKYLKVSFDTVQQLMEVKRDLSHVVERNQAKFDALEAYESILAGK
REQRLQDCLDSLVELREYDVPYHVRFAVDKDVRSGQWYNVSISSTDVTLEKRTDILQRAE
VRVCAFDIETTKLELKFPDAEYDQIMMISYMVDGQGFLIVNRECVGEDIEDLEYTPKPEF
EGYFKVTNVSNEVELLRKWFSHMQEVKPGIYVTYNGDFFDWPFIERRASHHEIKMNEELG
FRCDHNQGECRAKFVCHLDCFAWVKRDSYLPQGSHGLKAVTKAKLGYDPLEVNPEDMVQF
AMEKPQTMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMVPDEVLRKGSGTLCEMLLMV
EAYKANVVCPNKNQADPEKFYQSHLLESETYIGGHVECLESGVFRSDIPTSFKLDTSAYQ
QLIDNLDRDLEYAITVEGKMRMDSVSNYDEVKEKIKEKLEKLRDCPIREEGPLIYHLDVA
AMYPNIILTNRLQPPSIVTNEICTACDFNRPGKTCLRKLEWVWRGVTFMAKKSDYYHLKK
QIESEFVDAGTNIQSSKSFLDLPKVEQQSKLKERLKKYCQKAYRRVLDKPSTEVREAGIC
MRENPFYVDTVRSFRDRRYEYKTLNKVWKGKLSEAKASGNSIKIQEAQDMVVVYDSLQLA
HKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNACLLIERIGRPLELDTDGIWCA
LPGSFPENFTFKTIDMKKFTISYPCVMLNVDVAKNNTNDQYQTLVDPVRKTYESHSECSI
EFEVDGPYKAMIIPASKEEGVLLKKRYAVFNHDGTLAELKGFEIKRRGELKLIKVFQAEL
FDKFLHGSTLEECYSAVAAVANRWLDLLDNQGKDIADSELLDYISESSTMSKSLADYGEQ
KSCAVTTAKRLADFLGDTMVKDKGLRCQYIVACEPKGSPVSERAVPVAIFTLSKTEPERM
KFYLGKWCKQRLSSDHKVDIRLIIDWSYYKQRLSSAIQKVITIPAAMQKVANPVPRVLHP
DWLHKKVREKEDKFRQRKLADMFSSANKNHSVAQDDMNDIEDFCKENKPGVKGPKPIARS
YEVNKEQFGREQQESKDPKCDDDISFENIDKNVDYQGWLEVKKRKWKGIVEKKKKRRLGD
QRSLKQIESHEIKKKVTQVRRGVGSFFRRPEEALTSSHWQIIQLVPSPQIGQFFAWVVVE
GLMLKIPLTIPRVFYINSKAPIDGKFPGKCVNKILPHGKPCYNMIEVEIQEEQFRKESKK
LAALLADPEIEGIYETKVPLEFSAICQIGCVCKIDNTAKHRNTQDGWKVGELHMKTTTEC
RYLERSIPLLYLYNSTSTLRAIYVLYCHASKLMSAVVVNPYGDKELLPSALERQFRDGCQ
ELSLESLSWDGIVFQVDYVDHAEAAEKIIQKAISEYREENSGPTVVVTECPDFNSIKDGI
KALDDFPCVRIPFNGDDNSYQPVSWQRPAAKLAMFRCAAAFQWLDRRISQSRYAHVPLGN
FGLDWLTFTVDIFLSRALRDQQQVLWVSDNGIPDLGGLNNEETFFADEVQQTSLAYPGAY
RKISVELKIHHLAVNALLKSNLVSEMEGGDFLGFEQDVNPRGSSSNVNASFDETTGCAQA
FRVLKQLINSCLTDVCKSRNIYADSILQRLSWWLCSPCSKLHDPALHLMLHKVMQKVFAL
LLTDLRRLGATIIFADFSKIVIDTGKFDLSAAKAYCDSLLTAVGNSDIFEWILLEPVHYW
HSLLFMDQYNYAGIQATDDEISPDEVTIEPKWSVARLFPEYIQRDFVIIVAKFIFDPWKF
SLEKKRGSSESLEAQMIEYLKEQIPSSFFNMLVAKINDIVSHMKEIDVSDASRDSSQAPK
RDYTLELIQTICAVMGLDQNVEQDVRVMKRNLLKYINVKEFAAEAEFLDPGPSFILPNVA
CSNCDAYRDLDIGRDPALLTEKEWCCVDSQCGKIYDREQMENSLLQMVRQRERMYHMQDL
VCTRCNQVKAAHLTEQCECSGSFRCKESGSEFLKRMEIFLDIAKRQKFKLLEECTSWILD
PTGSWQTNTGRHHS
NT seq 6525 nt   +upstreamnt  +downstreamnt
atgagcggagataatcgaagatgggatcgaaaggactcgcggagatcgaatactcagaaa
gtcgtgaaaacggcggaagatgagctcgaatctaaactcggatttgggcttttctccgaa
ggggaaacgcgcctcgggtggctactcacattcgcatcatcatcttgggaagatcccgat
actgggaagacttatagctgtgtggatctttactttgttacccaggacgggttttatttc
aagacaaagtacaagttccgcccttacttctatgcagctacgaaagagaaaatggaactg
gaagttgaagcgtacttgagacggcgatatgaaagacaagttgctgatattgagattgtt
gaaaaagaggatcttgatcttaaaaatcatctctctggcctgcgaaagaaatacctaaaa
gtatcatttgatactgtgcaacaattgatggaagtcaaaagggatctgtcgcatgttgtc
gaacgaaaccaggcaaaatttgacgcacttgaagcatacgaatccattttggctggaaaa
cgagaacaacgtcttcaagattgcttagactctttagtggaacttcgcgagtacgatgtt
ccttatcatgttcgatttgcagttgataaagacgtgcggagtgggcaatggtacaatgtc
agtatttccagcactgatgtcacactagagaagaggacagatattctccagcgcgcagaa
gtccgtgtttgtgcattcgatatagagacaacaaagcttgagttgaaatttccggatgct
gaatatgatcaaattatgatgatatcttacatggtcgatgggcaaggttttctaattgtt
aacagagagtgtgttggcgaagacatagaagatctggagtatacacccaaaccagagttt
gaaggatatttcaaagttactaacgttagcaacgaggttgaactccttcgaaaatggttt
tcccatatgcaagaggttaaacccggtatttatgttacatataacggtgattttttcgac
tggccatttatagaacgcagagcgtcccatcatgagatcaaaatgaatgaggagttggga
ttccgttgtgatcataatcaaggtgaatgtcgagctaaattcgtttgccatttagattgt
tttgcttgggtgaaacgggatagctatcttcctcagggaagccatggtctgaaggccgtt
acaaaggcgaaactgggctatgatccactggaagtgaacccagaagacatggttcagttt
gccatggaaaaaccacagacaatggcctcctattctgtctctgatgctgttgcaacttat
tacctatacatgacatatgttcacccgttcattttttctctcgcgactatcatccctatg
gtccctgatgaggtcttacgtaaaggaagtggaaccctttgtgaaatgcttctgatggtt
gaggcgtataaggcaaatgttgtatgtcccaataaaaaccaagctgaccctgagaagttc
taccaaagtcaccttcttgaaagtgagacatatattggtggccatgtagagtgcctcgaa
agtggtgttttccgatctgacattccaaccagttttaagctagacacatcggcataccag
caactgatcgataaccttgaccgggatctggagtatgctatcactgtagaagggaaaatg
agaatggattcagtttccaattatgatgaagtgaaggaaaaaatcaaggaaaagctggaa
aagttacgagattgccctatacgtgaagagggacctcttatttatcaccttgatgttgca
gcgatgtatccaaatatcatcttaacaaataggcttcagccaccatcaatagttacgaat
gaaatttgcaccgcatgtgatttcaaccgcccgggaaaaacgtgtcttcgaaaacttgaa
tgggtttggcgtggggtgacattcatggccaagaaaagtgattattaccatctgaagaag
cagattgagtccgaatttgttgatgctggtacaaatattcagtcttcaaaatctttcctt
gatctaccaaaggtggagcaacaatctaaactaaaagaaagactgaaaaaatattgtcaa
aaggcatatcgacgagtacttgacaagccaagcactgaagttcgtgaggctgggatatgc
atgagagaaaatccgttttatgtagacactgttcgaagctttcgagataggaggtatgaa
tacaaaacacttaacaaggtctggaagggaaagttgtcagaggccaaggcaagtggcaat
tcaatcaagatccaggaagcacaggacatggtagtggtttacgattccttgcagctagct
cataagtgtattcttaattccttctatggatatgtcatgcgaaagggtgcaagatggtac
tctatggaaatggctggtgtagttacctatactggagccaaaatcatccagaatgcctgt
ttgcttattgagcgtattgggagaccacttgagttggatacagatggtatatggtgtgct
ctacctggatcttttcctgagaactttacttttaagacgatagacatgaagaaattcacg
atctcttatccgtgtgtaatgcttaatgttgatgtggctaaaaataatacaaatgatcaa
tatcagactcttgtagatcctgtacgcaagacgtacgagtcgcatagtgaatgctccatt
gaattcgaagtggatggaccgtacaaggcaatgattattcctgcatcgaaagaagaagga
gtcttacttaagaagcggtatgctgttttcaatcatgacggaaccttagcagaactcaag
ggatttgagatcaagcgtagaggggagctgaaactcattaaagttttccaggccgagctt
tttgacaaatttctccatggatcaacacttgaagagtgttattcggctgttgcagccgtt
gcaaatcggtggcttgacctactcgataatcaaggaaaagatattgccgatagtgaacta
ctagattatatatcagaatcaagcaccatgagcaaatccttagcagattatggtgaacaa
aagtcatgtgcagtgaccacagcaaaacgcctggctgattttcttggtgatacaatggtc
aaagataaaggactgcgttgccaatacattgttgcttgtgaaccaaaggggtcacctgta
agtgaacgtgctgtccctgttgccatatttaccttatctaaaacggaacctgaaagaatg
aagttttatctgggaaaatggtgcaagcagcgccttagttcagaccataaagttgatatt
cgtttaattattgactggtcgtattacaagcagcgtcttagttcagctatccaaaaagtt
atcaccattcccgctgcaatgcagaaggtggcaaatcccgttcctagggtgcttcatcct
gattggcttcataaaaaggtccgtgaaaaagaagataaatttcgccagagaaaactagct
gatatgttcagctcagcaaacaaaaatcattcggtggctcaagatgatatgaacgatatt
gaggatttttgcaaagaaaacaagcctggcgtaaagggaccaaagccaattgcacgttct
tatgaagttaataaagaacagtttgggcgtgagcagcaagagagcaaggatccaaagtgc
gatgacgatatctcatttgagaacattgacaagaacgtggattaccaaggttggcttgaa
gtgaaaaaaagaaaatggaaaggaattgtggagaagaagaagaaaagaaggttgggtgat
caacgatctttaaagcagattgaatctcatgagataaagaaaaaagtcacacaggttaga
agaggtgtaggttcattctttaggaggcctgaagaagctttgactagctcacattggcag
ataatacagctggtcccaagtccacagatcggacaatttttcgcttgggtggttgtggaa
ggattgatgcttaaaatcccattgacaatcccaagagtgttttacattaattccaaagct
cctatagatggaaaatttcccggaaagtgtgtcaacaagattcttcctcatggaaagcct
tgttataatatgattgaggtagagattcaggaagaacaatttagaaaagaaagcaagaag
cttgcagctcttcttgcagaccctgaaattgagggcatatatgaaacaaaggtgccgctg
gagtttagtgctatatgtcagataggatgtgtatgcaaaattgataacacagccaagcac
cgtaacacccaagatggatggaaagttggtgaacttcatatgaaaactacaactgaatgc
cgctacctggagcgatcaattccacttctttacttgtataacagcacctcaacactacgt
gctatatatgttctatattgtcatgcatcgaagcttatgtctgccgtggtagttaatcct
tatggcgacaaggaattattaccatctgccctagagagacagtttagagatggttgccaa
gaattgtcactcgagtcattgtcttgggatggtatcgttttccaggtggactatgttgac
catgctgaagctgccgaaaagattatacaaaaagcgataagtgaatacagagaagaaaat
tctggaccaactgttgtagtcactgaatgccctgactttaactccatcaaggatggtata
aaagccctggatgatttcccatgtgtgaggattcccttcaacggcgatgacaatagttat
cagcctgtctcctggcaacgtccggcagcaaaattagcaatgttccgttgtgctgcagca
tttcagtggttggatcgaaggatttcccagtcaagatatgcccatgtgcctttggggaat
tttggactagattggttaacattcacagtagatatcttcctgtccagggcactccgtgac
cagcagcaggtcctttgggtgtcagataatggtattccagaccttggtggtctgaacaat
gaagagacattctttgctgatgaggtgcaacagacaagtttggcatatcctggagcgtat
agaaaaatttctgtggagttaaagatccatcacttggctgttaatgcccttctgaaaagc
aacctggtgagcgagatggaaggaggtgactttttgggatttgaacaggatgtgaatcct
agaggaagtagttcgaacgttaacgccagttttgatgagaccactggatgtgctcaagca
ttccgagtcctgaaacaattgattaatagttgcttgactgatgtgtgtaaatcacgcaat
atatatgctgattccattttgcaacgtttgtcttggtggctctgtagcccttgctcgaag
cttcatgatccagctcttcatctcatgcttcacaaggtcatgcaaaaggtgtttgcgctg
cttttgactgatttgcggagattaggtgcaacaataatatttgcagacttctcaaagatc
gttatcgacacagggaaatttgatctatctgctgctaaggcttattgtgacagcttgctc
acagctgtagggaatagcgatatctttgagtggatcttgctcgagccggttcactactgg
cactcattactcttcatggaccagtataactacgctggcatccaagctaccgacgatgaa
atttcacctgacgaagtgactattgaaccaaagtggagtgtcgctcgacttttccctgag
tatattcagagggatttcgtcataattgttgccaagtttatatttgacccatggaaattc
tcattagagaagaaaagaggcagttcagaaagtttagaggcacagatgatagaatatctt
aaggaacagataccatccagcttctttaatatgcttgttgcaaaaatcaatgatatcgtg
tcacacatgaaggagatagacgtttcagatgcatctcgggattctagtcaagctcccaaa
agagattacacgttagagctcatacaaactatctgtgctgttatgggtcttgaccaaaat
gtcgagcaagatgttcgggtaatgaaaaggaatctattgaagtacattaacgtaaaagaa
tttgccgctgaagccgaatttcttgatcctgggccttcctttatcttgcctaatgtggct
tgcagcaactgtgatgcctacagagacctagatattggcagagacccagctctattaaca
gagaaagaatggtgctgcgtagattcacaatgtgggaagatatatgacagagagcagatg
gaaaatagtcttctccagatggtgagacagagagaaagaatgtaccacatgcaggatcta
gtttgcactaggtgcaatcaggtgaaagcggctcatttgacagagcagtgtgagtgttct
ggatcctttagatgcaaggagagcgggtctgagttcctcaagaggatggagattttcttg
gatatagcaaagcgccagaagtttaaactgttagaagaatgcacatcttggatcttagat
cccaccggaagctggcaaaccaataccggaagacatcattcgtag

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